Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24120

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24110 and RR42_RS24115 overlap by 4 nucleotidesRR42_RS24115 and RR42_RS24120 are separated by 53 nucleotidesRR42_RS24120 and RR42_RS24125 are separated by 138 nucleotides RR42_RS24110: RR42_RS24110 - C4-dicarboxylate ABC transporter permease, at 733,613 to 734,929 _RS24110 RR42_RS24115: RR42_RS24115 - C4-dicarboxylate ABC transporter permease, at 734,926 to 735,444 _RS24115 RR42_RS24120: RR42_RS24120 - C4-dicarboxylate ABC transporter substrate-binding protein, at 735,498 to 736,481 _RS24120 RR42_RS24125: RR42_RS24125 - hypothetical protein, at 736,620 to 740,075 _RS24125 Position (kb) 735 736 737Strain fitness (log2 ratio) -2 -1 0 1 2at 734.622 kb on - strand, within RR42_RS24110at 734.771 kb on - strand, within RR42_RS24110at 734.811 kb on + strandat 734.815 kb on + strandat 734.815 kb on + strandat 734.816 kb on - strandat 734.816 kb on - strandat 734.837 kb on + strandat 734.838 kb on - strandat 734.934 kb on + strandat 734.935 kb on - strandat 734.939 kb on - strandat 734.939 kb on - strandat 734.939 kb on - strandat 734.967 kb on + strandat 735.093 kb on - strand, within RR42_RS24115at 735.152 kb on - strand, within RR42_RS24115at 735.152 kb on - strand, within RR42_RS24115at 735.152 kb on - strand, within RR42_RS24115at 735.213 kb on + strand, within RR42_RS24115at 735.275 kb on + strand, within RR42_RS24115at 735.275 kb on + strand, within RR42_RS24115at 735.275 kb on + strand, within RR42_RS24115at 735.276 kb on - strand, within RR42_RS24115at 735.363 kb on + strand, within RR42_RS24115at 735.364 kb on - strand, within RR42_RS24115at 735.374 kb on - strand, within RR42_RS24115at 735.374 kb on - strand, within RR42_RS24115at 735.419 kb on + strandat 735.419 kb on + strandat 735.483 kb on + strandat 735.592 kb on + strandat 735.593 kb on - strandat 735.607 kb on + strand, within RR42_RS24120at 735.607 kb on + strand, within RR42_RS24120at 735.608 kb on - strand, within RR42_RS24120at 735.809 kb on - strand, within RR42_RS24120at 735.836 kb on + strand, within RR42_RS24120at 735.916 kb on + strand, within RR42_RS24120at 735.916 kb on + strand, within RR42_RS24120at 735.943 kb on - strand, within RR42_RS24120at 735.943 kb on - strand, within RR42_RS24120at 735.943 kb on - strand, within RR42_RS24120at 735.943 kb on - strand, within RR42_RS24120at 735.963 kb on + strand, within RR42_RS24120at 736.117 kb on + strand, within RR42_RS24120at 736.117 kb on + strand, within RR42_RS24120at 736.118 kb on - strand, within RR42_RS24120at 736.118 kb on - strand, within RR42_RS24120at 736.169 kb on + strand, within RR42_RS24120at 736.170 kb on - strand, within RR42_RS24120at 736.170 kb on - strand, within RR42_RS24120at 736.170 kb on - strand, within RR42_RS24120at 736.201 kb on + strand, within RR42_RS24120at 736.201 kb on + strand, within RR42_RS24120at 736.226 kb on + strand, within RR42_RS24120at 736.226 kb on + strand, within RR42_RS24120at 736.299 kb on + strand, within RR42_RS24120at 736.299 kb on + strand, within RR42_RS24120at 736.300 kb on - strand, within RR42_RS24120at 736.471 kb on - strandat 736.497 kb on - strandat 736.504 kb on + strandat 736.504 kb on + strandat 736.505 kb on - strandat 736.655 kb on + strandat 736.655 kb on + strandat 736.669 kb on - strandat 736.669 kb on - strandat 736.735 kb on + strandat 736.735 kb on + strandat 736.736 kb on - strandat 736.912 kb on + strandat 736.912 kb on + strandat 736.913 kb on - strandat 736.913 kb on - strandat 736.913 kb on - strandat 736.913 kb on - strandat 736.994 kb on - strand, within RR42_RS24125at 737.013 kb on + strand, within RR42_RS24125at 737.013 kb on + strand, within RR42_RS24125at 737.013 kb on + strand, within RR42_RS24125at 737.013 kb on + strand, within RR42_RS24125at 737.014 kb on - strand, within RR42_RS24125at 737.053 kb on + strand, within RR42_RS24125at 737.128 kb on + strand, within RR42_RS24125at 737.128 kb on + strand, within RR42_RS24125at 737.129 kb on - strand, within RR42_RS24125at 737.446 kb on + strand, within RR42_RS24125at 737.446 kb on + strand, within RR42_RS24125at 737.447 kb on - strand, within RR42_RS24125at 737.447 kb on - strand, within RR42_RS24125

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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734,622 - RR42_RS24110 0.77 +0.5
734,771 - RR42_RS24110 0.88 +1.2
734,811 + -0.3
734,815 + +0.8
734,815 + -0.2
734,816 - -0.1
734,816 - -0.5
734,837 + +0.2
734,838 - -0.7
734,934 + +0.8
734,935 - +0.5
734,939 - -1.5
734,939 - -0.6
734,939 - -1.3
734,967 + +0.7
735,093 - RR42_RS24115 0.32 -0.2
735,152 - RR42_RS24115 0.44 +0.4
735,152 - RR42_RS24115 0.44 -0.1
735,152 - RR42_RS24115 0.44 -1.3
735,213 + RR42_RS24115 0.55 +0.9
735,275 + RR42_RS24115 0.67 +1.0
735,275 + RR42_RS24115 0.67 -0.9
735,275 + RR42_RS24115 0.67 -1.3
735,276 - RR42_RS24115 0.67 -1.3
735,363 + RR42_RS24115 0.84 +2.0
735,364 - RR42_RS24115 0.84 -0.2
735,374 - RR42_RS24115 0.86 +1.0
735,374 - RR42_RS24115 0.86 +0.2
735,419 + -1.0
735,419 + -1.1
735,483 + -0.5
735,592 + +0.4
735,593 - -0.4
735,607 + RR42_RS24120 0.11 +0.0
735,607 + RR42_RS24120 0.11 -0.0
735,608 - RR42_RS24120 0.11 -0.3
735,809 - RR42_RS24120 0.32 -0.0
735,836 + RR42_RS24120 0.34 +0.4
735,916 + RR42_RS24120 0.42 -1.2
735,916 + RR42_RS24120 0.42 +0.4
735,943 - RR42_RS24120 0.45 -0.4
735,943 - RR42_RS24120 0.45 -1.5
735,943 - RR42_RS24120 0.45 -0.7
735,943 - RR42_RS24120 0.45 +0.0
735,963 + RR42_RS24120 0.47 +0.7
736,117 + RR42_RS24120 0.63 -0.5
736,117 + RR42_RS24120 0.63 +0.0
736,118 - RR42_RS24120 0.63 +0.1
736,118 - RR42_RS24120 0.63 -1.4
736,169 + RR42_RS24120 0.68 +0.5
736,170 - RR42_RS24120 0.68 -0.6
736,170 - RR42_RS24120 0.68 +0.1
736,170 - RR42_RS24120 0.68 -0.9
736,201 + RR42_RS24120 0.71 -0.4
736,201 + RR42_RS24120 0.71 -0.1
736,226 + RR42_RS24120 0.74 -0.0
736,226 + RR42_RS24120 0.74 +0.6
736,299 + RR42_RS24120 0.81 -0.1
736,299 + RR42_RS24120 0.81 +0.2
736,300 - RR42_RS24120 0.82 -0.9
736,471 - -0.4
736,497 - -1.8
736,504 + +0.5
736,504 + -0.5
736,505 - +0.3
736,655 + -0.2
736,655 + +1.0
736,669 - +0.4
736,669 - -0.6
736,735 + -0.3
736,735 + -0.3
736,736 - -0.5
736,912 + +0.2
736,912 + -1.1
736,913 - -0.3
736,913 - -0.3
736,913 - -0.2
736,913 - +1.3
736,994 - RR42_RS24125 0.11 -0.3
737,013 + RR42_RS24125 0.11 +0.6
737,013 + RR42_RS24125 0.11 +0.4
737,013 + RR42_RS24125 0.11 -0.7
737,013 + RR42_RS24125 0.11 -1.2
737,014 - RR42_RS24125 0.11 +0.1
737,053 + RR42_RS24125 0.13 -0.3
737,128 + RR42_RS24125 0.15 -0.3
737,128 + RR42_RS24125 0.15 -0.4
737,129 - RR42_RS24125 0.15 -0.4
737,446 + RR42_RS24125 0.24 +0.7
737,446 + RR42_RS24125 0.24 +0.4
737,447 - RR42_RS24125 0.24 -2.4
737,447 - RR42_RS24125 0.24 -0.6

Or see this region's nucleotide sequence