Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS22660

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS22655 and RR42_RS22660 are separated by 56 nucleotidesRR42_RS22660 and RR42_RS22665 are separated by 176 nucleotidesRR42_RS22665 and RR42_RS22670 are separated by 375 nucleotides RR42_RS22655: RR42_RS22655 - mandelate racemase, at 416,656 to 417,813 _RS22655 RR42_RS22660: RR42_RS22660 - hypothetical protein, at 417,870 to 418,847 _RS22660 RR42_RS22665: RR42_RS22665 - hypothetical protein, at 419,024 to 419,311 _RS22665 RR42_RS22670: RR42_RS22670 - penicillin acylase, at 419,687 to 422,188 _RS22670 Position (kb) 417 418 419Strain fitness (log2 ratio) -2 -1 0 1 2 3at 417.109 kb on + strandat 417.109 kb on + strand, within RR42_RS22655at 417.109 kb on + strand, within RR42_RS22655at 417.109 kb on + strand, within RR42_RS22655at 417.109 kb on + strand, within RR42_RS22655at 417.110 kb on - strand, within RR42_RS22655at 417.136 kb on - strand, within RR42_RS22655at 417.136 kb on - strand, within RR42_RS22655at 417.460 kb on - strand, within RR42_RS22655at 417.856 kb on + strandat 417.856 kb on + strandat 417.893 kb on - strandat 418.137 kb on + strand, within RR42_RS22660at 418.137 kb on + strand, within RR42_RS22660at 418.137 kb on + strand, within RR42_RS22660at 418.173 kb on + strand, within RR42_RS22660at 418.185 kb on + strand, within RR42_RS22660at 418.185 kb on + strand, within RR42_RS22660at 418.186 kb on - strand, within RR42_RS22660at 418.186 kb on - strand, within RR42_RS22660at 418.251 kb on + strand, within RR42_RS22660at 418.251 kb on + strand, within RR42_RS22660at 418.252 kb on - strand, within RR42_RS22660at 418.308 kb on + strand, within RR42_RS22660at 418.309 kb on - strand, within RR42_RS22660at 418.309 kb on - strand, within RR42_RS22660at 418.339 kb on - strand, within RR42_RS22660at 418.339 kb on - strand, within RR42_RS22660at 418.416 kb on + strand, within RR42_RS22660at 418.416 kb on + strand, within RR42_RS22660at 418.416 kb on + strand, within RR42_RS22660at 418.416 kb on + strand, within RR42_RS22660at 418.417 kb on - strand, within RR42_RS22660at 418.425 kb on + strand, within RR42_RS22660at 418.426 kb on - strand, within RR42_RS22660at 418.426 kb on - strand, within RR42_RS22660at 418.510 kb on - strand, within RR42_RS22660at 418.510 kb on - strand, within RR42_RS22660at 418.510 kb on - strand, within RR42_RS22660at 418.510 kb on - strand, within RR42_RS22660at 418.583 kb on + strand, within RR42_RS22660at 418.907 kb on + strandat 418.908 kb on - strandat 418.911 kb on - strandat 418.921 kb on + strandat 418.922 kb on - strandat 418.922 kb on - strandat 418.922 kb on - strandat 418.947 kb on - strandat 418.947 kb on - strandat 418.947 kb on - strandat 419.036 kb on + strandat 419.036 kb on + strandat 419.037 kb on - strandat 419.037 kb on - strandat 419.162 kb on + strand, within RR42_RS22665at 419.162 kb on + strand, within RR42_RS22665at 419.162 kb on + strand, within RR42_RS22665at 419.163 kb on - strand, within RR42_RS22665at 419.163 kb on - strand, within RR42_RS22665at 419.163 kb on - strand, within RR42_RS22665at 419.163 kb on - strand, within RR42_RS22665at 419.163 kb on - strand, within RR42_RS22665at 419.357 kb on - strandat 419.415 kb on - strandat 419.536 kb on - strandat 419.775 kb on - strandat 419.775 kb on - strandat 419.775 kb on - strandat 419.775 kb on - strandat 419.775 kb on - strandat 419.790 kb on - strandat 419.801 kb on + strandat 419.801 kb on + strandat 419.801 kb on + strandat 419.801 kb on + strandat 419.801 kb on + strandat 419.801 kb on + strandat 419.802 kb on - strandat 419.802 kb on - strandat 419.807 kb on + strandat 419.807 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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417,109 + +0.5
417,109 + RR42_RS22655 0.39 -0.6
417,109 + RR42_RS22655 0.39 -0.1
417,109 + RR42_RS22655 0.39 +0.7
417,109 + RR42_RS22655 0.39 +0.3
417,110 - RR42_RS22655 0.39 +0.0
417,136 - RR42_RS22655 0.41 +0.3
417,136 - RR42_RS22655 0.41 +0.0
417,460 - RR42_RS22655 0.69 +0.8
417,856 + +0.0
417,856 + +0.9
417,893 - -1.1
418,137 + RR42_RS22660 0.27 -1.3
418,137 + RR42_RS22660 0.27 +0.0
418,137 + RR42_RS22660 0.27 -1.0
418,173 + RR42_RS22660 0.31 +0.4
418,185 + RR42_RS22660 0.32 +0.2
418,185 + RR42_RS22660 0.32 +0.7
418,186 - RR42_RS22660 0.32 -0.3
418,186 - RR42_RS22660 0.32 -0.3
418,251 + RR42_RS22660 0.39 +1.1
418,251 + RR42_RS22660 0.39 +0.8
418,252 - RR42_RS22660 0.39 -0.2
418,308 + RR42_RS22660 0.45 -0.2
418,309 - RR42_RS22660 0.45 +0.9
418,309 - RR42_RS22660 0.45 -1.7
418,339 - RR42_RS22660 0.48 -0.7
418,339 - RR42_RS22660 0.48 +0.8
418,416 + RR42_RS22660 0.56 +0.3
418,416 + RR42_RS22660 0.56 +1.4
418,416 + RR42_RS22660 0.56 -1.2
418,416 + RR42_RS22660 0.56 +0.1
418,417 - RR42_RS22660 0.56 -0.1
418,425 + RR42_RS22660 0.57 +0.9
418,426 - RR42_RS22660 0.57 -0.3
418,426 - RR42_RS22660 0.57 +0.5
418,510 - RR42_RS22660 0.65 +1.0
418,510 - RR42_RS22660 0.65 -0.4
418,510 - RR42_RS22660 0.65 -1.6
418,510 - RR42_RS22660 0.65 -0.8
418,583 + RR42_RS22660 0.73 +1.5
418,907 + -0.1
418,908 - +0.4
418,911 - -0.4
418,921 + -0.2
418,922 - +0.4
418,922 - +0.6
418,922 - +0.7
418,947 - +0.3
418,947 - +0.8
418,947 - -1.0
419,036 + -1.5
419,036 + -0.2
419,037 - -0.7
419,037 - +0.2
419,162 + RR42_RS22665 0.48 -0.2
419,162 + RR42_RS22665 0.48 +0.7
419,162 + RR42_RS22665 0.48 +0.0
419,163 - RR42_RS22665 0.48 +0.3
419,163 - RR42_RS22665 0.48 -0.4
419,163 - RR42_RS22665 0.48 -0.7
419,163 - RR42_RS22665 0.48 -0.0
419,163 - RR42_RS22665 0.48 -0.0
419,357 - -0.2
419,415 - +0.3
419,536 - -1.1
419,775 - -0.7
419,775 - -1.1
419,775 - -0.7
419,775 - -0.5
419,775 - +0.0
419,790 - +0.3
419,801 + -0.1
419,801 + -0.3
419,801 + +0.0
419,801 + +1.1
419,801 + -0.6
419,801 + +0.1
419,802 - +0.2
419,802 - +0.5
419,807 + +3.0
419,807 + -1.8

Or see this region's nucleotide sequence