Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21710 and RR42_RS21715 are separated by 273 nucleotides RR42_RS21715 and RR42_RS21720 are separated by 260 nucleotides
RR42_RS21710: RR42_RS21710 - haloacid dehalogenase, at 198,467 to 199,174
_RS21710
RR42_RS21715: RR42_RS21715 - ATPase AAA, at 199,448 to 201,484
_RS21715
RR42_RS21720: RR42_RS21720 - acetoin catabolism protein X, at 201,745 to 202,869
_RS21720
Position (kb) 199
200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.523 kb on + strand at 198.523 kb on + strand at 198.879 kb on - strand, within RR42_RS21710 at 198.879 kb on - strand, within RR42_RS21710 at 198.950 kb on + strand, within RR42_RS21710 at 198.950 kb on + strand, within RR42_RS21710 at 198.950 kb on + strand, within RR42_RS21710 at 198.951 kb on - strand, within RR42_RS21710 at 199.058 kb on + strand, within RR42_RS21710 at 199.058 kb on + strand, within RR42_RS21710 at 199.059 kb on - strand, within RR42_RS21710 at 199.059 kb on - strand, within RR42_RS21710 at 199.139 kb on - strand at 199.139 kb on - strand at 199.223 kb on + strand at 199.329 kb on + strand at 199.334 kb on + strand at 199.335 kb on - strand at 199.335 kb on - strand at 199.335 kb on - strand at 199.482 kb on + strand at 199.483 kb on - strand at 199.691 kb on + strand, within RR42_RS21715 at 199.692 kb on - strand, within RR42_RS21715 at 199.692 kb on - strand, within RR42_RS21715 at 199.692 kb on - strand, within RR42_RS21715 at 199.715 kb on + strand, within RR42_RS21715 at 199.715 kb on + strand, within RR42_RS21715 at 199.716 kb on - strand, within RR42_RS21715 at 199.716 kb on - strand, within RR42_RS21715 at 199.758 kb on - strand, within RR42_RS21715 at 199.758 kb on - strand, within RR42_RS21715 at 199.805 kb on + strand, within RR42_RS21715 at 199.918 kb on + strand, within RR42_RS21715 at 200.051 kb on + strand, within RR42_RS21715 at 200.051 kb on + strand, within RR42_RS21715 at 200.052 kb on - strand, within RR42_RS21715 at 200.052 kb on - strand, within RR42_RS21715 at 200.052 kb on - strand, within RR42_RS21715 at 200.376 kb on - strand, within RR42_RS21715 at 200.376 kb on - strand, within RR42_RS21715 at 200.376 kb on - strand, within RR42_RS21715 at 200.422 kb on + strand, within RR42_RS21715 at 200.425 kb on + strand, within RR42_RS21715 at 200.574 kb on - strand, within RR42_RS21715 at 200.942 kb on + strand, within RR42_RS21715 at 200.942 kb on + strand, within RR42_RS21715 at 200.943 kb on - strand, within RR42_RS21715 at 200.943 kb on - strand, within RR42_RS21715 at 201.164 kb on - strand, within RR42_RS21715 at 201.357 kb on - strand at 201.357 kb on - strand at 201.357 kb on - strand at 201.357 kb on - strand at 201.357 kb on - strand at 201.571 kb on - strand at 201.571 kb on - strand at 201.644 kb on - strand at 201.710 kb on + strand at 201.710 kb on + strand at 201.711 kb on - strand at 201.867 kb on + strand, within RR42_RS21720 at 202.414 kb on + strand, within RR42_RS21720 at 202.414 kb on + strand, within RR42_RS21720 at 202.415 kb on - strand, within RR42_RS21720
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 198,523 + -0.4 198,523 + +0.6 198,879 - RR42_RS21710 0.58 -0.2 198,879 - RR42_RS21710 0.58 +0.3 198,950 + RR42_RS21710 0.68 -0.1 198,950 + RR42_RS21710 0.68 -0.5 198,950 + RR42_RS21710 0.68 +0.6 198,951 - RR42_RS21710 0.68 +0.0 199,058 + RR42_RS21710 0.83 -0.3 199,058 + RR42_RS21710 0.83 -1.0 199,059 - RR42_RS21710 0.84 +0.0 199,059 - RR42_RS21710 0.84 +0.8 199,139 - +0.8 199,139 - +0.5 199,223 + -1.6 199,329 + -0.1 199,334 + +0.2 199,335 - -0.1 199,335 - -0.9 199,335 - -0.0 199,482 + +0.4 199,483 - -0.7 199,691 + RR42_RS21715 0.12 -0.3 199,692 - RR42_RS21715 0.12 -0.6 199,692 - RR42_RS21715 0.12 +0.2 199,692 - RR42_RS21715 0.12 +0.5 199,715 + RR42_RS21715 0.13 +0.6 199,715 + RR42_RS21715 0.13 +1.4 199,716 - RR42_RS21715 0.13 +0.4 199,716 - RR42_RS21715 0.13 +1.1 199,758 - RR42_RS21715 0.15 +0.3 199,758 - RR42_RS21715 0.15 +0.7 199,805 + RR42_RS21715 0.18 -0.6 199,918 + RR42_RS21715 0.23 +0.9 200,051 + RR42_RS21715 0.30 +0.5 200,051 + RR42_RS21715 0.30 -0.5 200,052 - RR42_RS21715 0.30 +0.7 200,052 - RR42_RS21715 0.30 +0.8 200,052 - RR42_RS21715 0.30 +0.5 200,376 - RR42_RS21715 0.46 +0.2 200,376 - RR42_RS21715 0.46 +0.5 200,376 - RR42_RS21715 0.46 -0.8 200,422 + RR42_RS21715 0.48 -0.1 200,425 + RR42_RS21715 0.48 -0.2 200,574 - RR42_RS21715 0.55 +0.4 200,942 + RR42_RS21715 0.73 -0.0 200,942 + RR42_RS21715 0.73 +0.2 200,943 - RR42_RS21715 0.73 +0.3 200,943 - RR42_RS21715 0.73 +0.8 201,164 - RR42_RS21715 0.84 +1.1 201,357 - -0.4 201,357 - +1.8 201,357 - +0.8 201,357 - -2.1 201,357 - +0.7 201,571 - -1.9 201,571 - +0.9 201,644 - +0.2 201,710 + +0.5 201,710 + -0.3 201,711 - -0.3 201,867 + RR42_RS21720 0.11 -0.8 202,414 + RR42_RS21720 0.59 +1.7 202,414 + RR42_RS21720 0.59 +0.3 202,415 - RR42_RS21720 0.60 +0.5
Or see this region's nucleotide sequence