Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21555 and RR42_RS21560 are separated by 11 nucleotides RR42_RS21560 and RR42_RS21565 are separated by 120 nucleotides RR42_RS21565 and RR42_RS21570 are separated by 646 nucleotides
RR42_RS21555: RR42_RS21555 - membrane protein, at 161,530 to 162,519
_RS21555
RR42_RS21560: RR42_RS21560 - hypothetical protein, at 162,531 to 163,229
_RS21560
RR42_RS21565: RR42_RS21565 - hypothetical protein, at 163,350 to 164,309
_RS21565
RR42_RS21570: RR42_RS21570 - membrane protein, at 164,956 to 166,104
_RS21570
Position (kb) 163
164
165 Strain fitness (log2 ratio) -2
-1
0
1
2 at 162.387 kb on + strand, within RR42_RS21555 at 162.548 kb on - strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.580 kb on + strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.581 kb on - strand at 162.616 kb on + strand, within RR42_RS21560 at 162.617 kb on - strand, within RR42_RS21560 at 162.678 kb on + strand, within RR42_RS21560 at 162.761 kb on + strand, within RR42_RS21560 at 162.871 kb on + strand, within RR42_RS21560 at 162.872 kb on - strand, within RR42_RS21560 at 163.240 kb on + strand at 163.278 kb on + strand at 163.278 kb on + strand at 163.278 kb on + strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.279 kb on - strand at 163.393 kb on + strand at 163.729 kb on + strand, within RR42_RS21565 at 163.729 kb on + strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.730 kb on - strand, within RR42_RS21565 at 163.837 kb on + strand, within RR42_RS21565 at 163.838 kb on - strand, within RR42_RS21565 at 163.838 kb on - strand, within RR42_RS21565 at 164.034 kb on + strand, within RR42_RS21565 at 164.221 kb on + strand at 164.222 kb on - strand at 164.289 kb on + strand at 164.290 kb on - strand at 164.290 kb on - strand at 164.290 kb on - strand at 164.290 kb on - strand at 164.336 kb on + strand at 164.398 kb on - strand at 164.440 kb on - strand at 164.622 kb on + strand at 164.622 kb on + strand at 164.688 kb on + strand at 164.716 kb on - strand at 164.819 kb on - strand at 164.819 kb on - strand at 164.819 kb on - strand at 164.819 kb on - strand at 164.823 kb on - strand at 165.079 kb on + strand, within RR42_RS21570 at 165.079 kb on + strand, within RR42_RS21570 at 165.080 kb on - strand, within RR42_RS21570 at 165.080 kb on - strand, within RR42_RS21570 at 165.090 kb on - strand, within RR42_RS21570 at 165.104 kb on + strand, within RR42_RS21570 at 165.104 kb on + strand, within RR42_RS21570 at 165.105 kb on - strand, within RR42_RS21570 at 165.236 kb on + strand, within RR42_RS21570 at 165.237 kb on - strand, within RR42_RS21570 at 165.237 kb on - strand, within RR42_RS21570 at 165.237 kb on - strand, within RR42_RS21570 at 165.237 kb on - strand, within RR42_RS21570 at 165.237 kb on - strand, within RR42_RS21570
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 162,387 + RR42_RS21555 0.87 +1.3 162,548 - +0.1 162,580 + -0.5 162,580 + -2.4 162,580 + +0.5 162,580 + -0.6 162,580 + +0.5 162,581 - +1.9 162,581 - +1.5 162,581 - +0.8 162,581 - -0.3 162,581 - -1.0 162,616 + RR42_RS21560 0.12 -0.4 162,617 - RR42_RS21560 0.12 -0.1 162,678 + RR42_RS21560 0.21 -0.3 162,761 + RR42_RS21560 0.33 -0.8 162,871 + RR42_RS21560 0.49 +0.5 162,872 - RR42_RS21560 0.49 +0.6 163,240 + +0.5 163,278 + -0.4 163,278 + -0.8 163,278 + +0.5 163,279 - +0.2 163,279 - +0.5 163,279 - -0.4 163,279 - +0.2 163,393 + +0.3 163,729 + RR42_RS21565 0.39 -0.5 163,729 + RR42_RS21565 0.39 -0.5 163,730 - RR42_RS21565 0.40 +0.5 163,730 - RR42_RS21565 0.40 -0.5 163,730 - RR42_RS21565 0.40 -1.7 163,730 - RR42_RS21565 0.40 -0.9 163,837 + RR42_RS21565 0.51 -0.5 163,838 - RR42_RS21565 0.51 -0.2 163,838 - RR42_RS21565 0.51 +0.3 164,034 + RR42_RS21565 0.71 +0.4 164,221 + +0.4 164,222 - -0.5 164,289 + +0.1 164,290 - -0.7 164,290 - +0.7 164,290 - -0.5 164,290 - -0.1 164,336 + -0.7 164,398 - -0.4 164,440 - -0.2 164,622 + -0.0 164,622 + -0.0 164,688 + -1.2 164,716 - +0.5 164,819 - -0.6 164,819 - -0.3 164,819 - -0.0 164,819 - -0.5 164,823 - -0.0 165,079 + RR42_RS21570 0.11 -0.2 165,079 + RR42_RS21570 0.11 +0.9 165,080 - RR42_RS21570 0.11 -0.8 165,080 - RR42_RS21570 0.11 -0.2 165,090 - RR42_RS21570 0.12 -0.6 165,104 + RR42_RS21570 0.13 +0.1 165,104 + RR42_RS21570 0.13 +0.1 165,105 - RR42_RS21570 0.13 -0.8 165,236 + RR42_RS21570 0.24 -1.3 165,237 - RR42_RS21570 0.24 +0.3 165,237 - RR42_RS21570 0.24 +0.4 165,237 - RR42_RS21570 0.24 -0.3 165,237 - RR42_RS21570 0.24 +0.1 165,237 - RR42_RS21570 0.24 +0.7
Or see this region's nucleotide sequence