Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21455 and RR42_RS21460 are separated by 36 nucleotides RR42_RS21460 and RR42_RS21465 are separated by 914 nucleotides
RR42_RS21455: RR42_RS21455 - transposase, at 143,611 to 144,705
_RS21455
RR42_RS21460: RR42_RS21460 - hypothetical protein, at 144,742 to 144,957
_RS21460
RR42_RS21465: RR42_RS21465 - hypothetical protein, at 145,872 to 146,066
_RS21465
Position (kb) 144
145 Strain fitness (log2 ratio) -1
0
1
2 at 143.975 kb on - strand, within RR42_RS21455 at 144.191 kb on - strand, within RR42_RS21455 at 144.636 kb on + strand at 144.636 kb on + strand at 144.766 kb on + strand, within RR42_RS21460 at 144.767 kb on - strand, within RR42_RS21460 at 144.827 kb on + strand, within RR42_RS21460 at 144.828 kb on - strand, within RR42_RS21460 at 144.880 kb on + strand, within RR42_RS21460 at 144.880 kb on + strand, within RR42_RS21460 at 145.012 kb on - strand at 145.100 kb on + strand at 145.100 kb on + strand at 145.100 kb on + strand at 145.100 kb on + strand at 145.103 kb on - strand at 145.192 kb on + strand at 145.192 kb on + strand at 145.192 kb on + strand at 145.204 kb on + strand at 145.204 kb on + strand at 145.205 kb on - strand at 145.243 kb on - strand at 145.326 kb on - strand at 145.561 kb on + strand at 145.593 kb on + strand at 145.595 kb on + strand at 145.640 kb on - strand at 145.668 kb on + strand at 145.686 kb on + strand at 145.687 kb on - strand at 145.700 kb on + strand at 145.700 kb on + strand at 145.724 kb on + strand at 145.903 kb on + strand, within RR42_RS21465 at 145.903 kb on + strand, within RR42_RS21465 at 145.904 kb on - strand, within RR42_RS21465 at 145.939 kb on + strand, within RR42_RS21465 at 145.939 kb on - strand, within RR42_RS21465 at 145.939 kb on - strand, within RR42_RS21465 at 145.939 kb on - strand, within RR42_RS21465 at 145.951 kb on - strand, within RR42_RS21465 at 145.951 kb on - strand, within RR42_RS21465
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 143,975 - RR42_RS21455 0.33 +0.8 144,191 - RR42_RS21455 0.53 -0.6 144,636 + +0.3 144,636 + +0.5 144,766 + RR42_RS21460 0.11 -0.6 144,767 - RR42_RS21460 0.12 -0.6 144,827 + RR42_RS21460 0.39 -1.6 144,828 - RR42_RS21460 0.40 -0.8 144,880 + RR42_RS21460 0.64 -0.0 144,880 + RR42_RS21460 0.64 -0.7 145,012 - -1.0 145,100 + +1.8 145,100 + +0.2 145,100 + -0.7 145,100 + +0.4 145,103 - -0.6 145,192 + -1.0 145,192 + -0.4 145,192 + -0.8 145,204 + -0.6 145,204 + +0.4 145,205 - +0.9 145,243 - +0.3 145,326 - +0.2 145,561 + -0.6 145,593 + +0.2 145,595 + -0.8 145,640 - +0.3 145,668 + +0.1 145,686 + -0.8 145,687 - +0.4 145,700 + +0.7 145,700 + +1.4 145,724 + +0.7 145,903 + RR42_RS21465 0.16 -0.2 145,903 + RR42_RS21465 0.16 -0.6 145,904 - RR42_RS21465 0.16 +0.4 145,939 + RR42_RS21465 0.34 +0.0 145,939 - RR42_RS21465 0.34 +1.0 145,939 - RR42_RS21465 0.34 -0.8 145,939 - RR42_RS21465 0.34 +1.1 145,951 - RR42_RS21465 0.41 +1.0 145,951 - RR42_RS21465 0.41 -0.2
Or see this region's nucleotide sequence