Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS20805 and RR42_RS20810 are separated by 128 nucleotides RR42_RS20810 and RR42_RS20815 are separated by 255 nucleotides RR42_RS20815 and RR42_RS20820 are separated by 65 nucleotides
RR42_RS20805: RR42_RS20805 - tRNA modification GTPase TrmE, at 4,515,442 to 4,516,896
_RS20805
RR42_RS20810: RR42_RS20810 - hypothetical protein, at 4,517,025 to 4,517,795
_RS20810
RR42_RS20815: RR42_RS20815 - phenylacetic acid degradation protein PaaI, at 4,518,051 to 4,518,488
_RS20815
RR42_RS20820: RR42_RS20820 - glyoxalase, at 4,518,554 to 4,518,940
_RS20820
Position (kb)
4517
4518 Strain fitness (log2 ratio)
-2
-1
0
1 at 4516.649 kb on + strand, within RR42_RS20805 at 4517.123 kb on - strand, within RR42_RS20810 at 4517.162 kb on - strand, within RR42_RS20810 at 4517.617 kb on - strand, within RR42_RS20810 at 4517.814 kb on + strand at 4517.814 kb on + strand at 4517.814 kb on + strand at 4517.815 kb on - strand at 4517.818 kb on + strand at 4517.819 kb on - strand at 4517.819 kb on - strand at 4517.829 kb on - strand at 4517.829 kb on - strand at 4517.899 kb on - strand at 4517.909 kb on + strand at 4517.918 kb on + strand at 4518.130 kb on + strand, within RR42_RS20815 at 4518.130 kb on + strand, within RR42_RS20815 at 4518.130 kb on + strand, within RR42_RS20815 at 4518.370 kb on + strand, within RR42_RS20815 at 4518.371 kb on - strand, within RR42_RS20815 at 4518.608 kb on + strand, within RR42_RS20820 at 4518.609 kb on - strand, within RR42_RS20820 at 4518.609 kb on - strand, within RR42_RS20820 at 4518.609 kb on - strand, within RR42_RS20820
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 4,516,649 + RR42_RS20805 0.83 +0.4 4,517,123 - RR42_RS20810 0.13 +0.7 4,517,162 - RR42_RS20810 0.18 -0.8 4,517,617 - RR42_RS20810 0.77 -0.5 4,517,814 + +0.4 4,517,814 + -0.2 4,517,814 + +0.7 4,517,815 - -0.6 4,517,818 + -0.7 4,517,819 - -0.1 4,517,819 - +0.2 4,517,829 - +1.6 4,517,829 - +0.6 4,517,899 - -1.1 4,517,909 + -0.1 4,517,918 + -0.2 4,518,130 + RR42_RS20815 0.18 -0.9 4,518,130 + RR42_RS20815 0.18 +0.4 4,518,130 + RR42_RS20815 0.18 +0.8 4,518,370 + RR42_RS20815 0.73 -0.3 4,518,371 - RR42_RS20815 0.73 -1.2 4,518,608 + RR42_RS20820 0.14 +0.4 4,518,609 - RR42_RS20820 0.14 -0.4 4,518,609 - RR42_RS20820 0.14 -1.9 4,518,609 - RR42_RS20820 0.14 +0.1
Or see this region's nucleotide sequence