Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20305

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20295 and RR42_RS20300 are separated by 50 nucleotidesRR42_RS20300 and RR42_RS20305 overlap by 4 nucleotidesRR42_RS20305 and RR42_RS20310 are separated by 261 nucleotidesRR42_RS20310 and RR42_RS20315 are separated by 69 nucleotides RR42_RS20295: RR42_RS20295 - alpha/beta hydrolase, at 4,390,956 to 4,391,891 _RS20295 RR42_RS20300: RR42_RS20300 - MerR family transcriptional regulator, at 4,391,942 to 4,392,442 _RS20300 RR42_RS20305: RR42_RS20305 - metal ABC transporter ATPase, at 4,392,439 to 4,394,910 _RS20305 RR42_RS20310: RR42_RS20310 - copper-binding protein, at 4,395,172 to 4,395,384 _RS20310 RR42_RS20315: RR42_RS20315 - membrane protein, at 4,395,454 to 4,396,182 _RS20315 Position (kb) 4392 4393 4394 4395Strain fitness (log2 ratio) -2 -1 0 1at 4391.672 kb on - strand, within RR42_RS20295at 4391.672 kb on - strand, within RR42_RS20295at 4391.944 kb on - strandat 4392.056 kb on - strand, within RR42_RS20300at 4392.242 kb on + strand, within RR42_RS20300at 4392.242 kb on + strand, within RR42_RS20300at 4392.372 kb on + strand, within RR42_RS20300at 4392.372 kb on + strand, within RR42_RS20300at 4392.373 kb on - strand, within RR42_RS20300at 4392.436 kb on + strandat 4392.436 kb on + strandat 4392.581 kb on + strandat 4392.581 kb on + strandat 4392.581 kb on + strandat 4392.582 kb on - strandat 4392.845 kb on - strand, within RR42_RS20305at 4392.845 kb on - strand, within RR42_RS20305at 4393.380 kb on + strand, within RR42_RS20305at 4393.609 kb on + strand, within RR42_RS20305at 4393.785 kb on - strand, within RR42_RS20305at 4393.785 kb on - strand, within RR42_RS20305at 4393.885 kb on + strand, within RR42_RS20305at 4393.885 kb on + strand, within RR42_RS20305at 4393.885 kb on + strand, within RR42_RS20305at 4393.904 kb on - strand, within RR42_RS20305at 4393.967 kb on - strand, within RR42_RS20305at 4394.114 kb on + strand, within RR42_RS20305at 4394.114 kb on + strand, within RR42_RS20305at 4394.115 kb on - strand, within RR42_RS20305at 4394.127 kb on + strand, within RR42_RS20305at 4394.127 kb on + strand, within RR42_RS20305at 4394.127 kb on + strand, within RR42_RS20305at 4394.127 kb on + strand, within RR42_RS20305at 4394.128 kb on - strand, within RR42_RS20305at 4394.169 kb on - strand, within RR42_RS20305at 4394.169 kb on - strand, within RR42_RS20305at 4394.169 kb on - strand, within RR42_RS20305at 4394.205 kb on + strand, within RR42_RS20305at 4394.205 kb on + strand, within RR42_RS20305at 4394.206 kb on - strand, within RR42_RS20305at 4394.246 kb on + strand, within RR42_RS20305at 4394.366 kb on - strand, within RR42_RS20305at 4394.366 kb on - strand, within RR42_RS20305at 4394.366 kb on - strand, within RR42_RS20305at 4394.366 kb on - strand, within RR42_RS20305at 4394.462 kb on + strand, within RR42_RS20305at 4394.666 kb on + strandat 4394.955 kb on + strandat 4394.955 kb on + strandat 4394.956 kb on - strandat 4394.956 kb on - strandat 4394.956 kb on - strandat 4395.070 kb on + strandat 4395.153 kb on + strandat 4395.154 kb on - strandat 4395.296 kb on + strand, within RR42_RS20310at 4395.455 kb on + strandat 4395.510 kb on + strandat 4395.588 kb on - strand, within RR42_RS20315at 4395.629 kb on + strand, within RR42_RS20315at 4395.629 kb on + strand, within RR42_RS20315at 4395.629 kb on + strand, within RR42_RS20315at 4395.630 kb on - strand, within RR42_RS20315at 4395.630 kb on - strand, within RR42_RS20315at 4395.755 kb on + strand, within RR42_RS20315at 4395.756 kb on - strand, within RR42_RS20315at 4395.756 kb on - strand, within RR42_RS20315at 4395.756 kb on - strand, within RR42_RS20315at 4395.776 kb on + strand, within RR42_RS20315at 4395.776 kb on + strand, within RR42_RS20315at 4395.776 kb on + strand, within RR42_RS20315at 4395.776 kb on + strand, within RR42_RS20315at 4395.777 kb on - strand, within RR42_RS20315at 4395.777 kb on - strand, within RR42_RS20315at 4395.777 kb on - strand, within RR42_RS20315at 4395.777 kb on - strand, within RR42_RS20315at 4395.812 kb on + strand, within RR42_RS20315at 4395.813 kb on - strand, within RR42_RS20315at 4395.863 kb on + strand, within RR42_RS20315at 4395.863 kb on + strand, within RR42_RS20315at 4395.864 kb on - strand, within RR42_RS20315

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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4,391,672 - RR42_RS20295 0.76 +0.9
4,391,672 - RR42_RS20295 0.76 -0.5
4,391,944 - +1.3
4,392,056 - RR42_RS20300 0.23 -2.0
4,392,242 + RR42_RS20300 0.60 +0.7
4,392,242 + RR42_RS20300 0.60 -1.5
4,392,372 + RR42_RS20300 0.86 +0.1
4,392,372 + RR42_RS20300 0.86 +1.0
4,392,373 - RR42_RS20300 0.86 -0.2
4,392,436 + -0.1
4,392,436 + +0.4
4,392,581 + +0.7
4,392,581 + -1.5
4,392,581 + -0.3
4,392,582 - -0.9
4,392,845 - RR42_RS20305 0.16 +0.0
4,392,845 - RR42_RS20305 0.16 -0.7
4,393,380 + RR42_RS20305 0.38 -0.9
4,393,609 + RR42_RS20305 0.47 -0.7
4,393,785 - RR42_RS20305 0.54 -1.4
4,393,785 - RR42_RS20305 0.54 -1.0
4,393,885 + RR42_RS20305 0.58 -1.0
4,393,885 + RR42_RS20305 0.58 +1.0
4,393,885 + RR42_RS20305 0.58 +1.0
4,393,904 - RR42_RS20305 0.59 +0.8
4,393,967 - RR42_RS20305 0.62 +0.5
4,394,114 + RR42_RS20305 0.68 -0.9
4,394,114 + RR42_RS20305 0.68 -0.7
4,394,115 - RR42_RS20305 0.68 +0.4
4,394,127 + RR42_RS20305 0.68 -1.3
4,394,127 + RR42_RS20305 0.68 -1.0
4,394,127 + RR42_RS20305 0.68 -0.7
4,394,127 + RR42_RS20305 0.68 +1.0
4,394,128 - RR42_RS20305 0.68 -0.6
4,394,169 - RR42_RS20305 0.70 +0.6
4,394,169 - RR42_RS20305 0.70 -0.4
4,394,169 - RR42_RS20305 0.70 +0.3
4,394,205 + RR42_RS20305 0.71 -1.5
4,394,205 + RR42_RS20305 0.71 -1.9
4,394,206 - RR42_RS20305 0.71 -1.8
4,394,246 + RR42_RS20305 0.73 -1.3
4,394,366 - RR42_RS20305 0.78 -1.0
4,394,366 - RR42_RS20305 0.78 -0.6
4,394,366 - RR42_RS20305 0.78 +0.4
4,394,366 - RR42_RS20305 0.78 -1.0
4,394,462 + RR42_RS20305 0.82 -0.7
4,394,666 + -0.6
4,394,955 + -0.5
4,394,955 + -0.2
4,394,956 - -0.0
4,394,956 - -0.3
4,394,956 - -0.3
4,395,070 + -0.4
4,395,153 + -0.6
4,395,154 - -0.8
4,395,296 + RR42_RS20310 0.58 -0.3
4,395,455 + +0.0
4,395,510 + -0.4
4,395,588 - RR42_RS20315 0.18 -0.9
4,395,629 + RR42_RS20315 0.24 -0.1
4,395,629 + RR42_RS20315 0.24 -0.2
4,395,629 + RR42_RS20315 0.24 -1.4
4,395,630 - RR42_RS20315 0.24 -1.3
4,395,630 - RR42_RS20315 0.24 -0.1
4,395,755 + RR42_RS20315 0.41 +0.3
4,395,756 - RR42_RS20315 0.41 +1.3
4,395,756 - RR42_RS20315 0.41 -0.6
4,395,756 - RR42_RS20315 0.41 +1.3
4,395,776 + RR42_RS20315 0.44 -0.8
4,395,776 + RR42_RS20315 0.44 +0.1
4,395,776 + RR42_RS20315 0.44 -1.3
4,395,776 + RR42_RS20315 0.44 +0.4
4,395,777 - RR42_RS20315 0.44 -0.3
4,395,777 - RR42_RS20315 0.44 +0.2
4,395,777 - RR42_RS20315 0.44 -0.5
4,395,777 - RR42_RS20315 0.44 -0.2
4,395,812 + RR42_RS20315 0.49 +1.6
4,395,813 - RR42_RS20315 0.49 -1.1
4,395,863 + RR42_RS20315 0.56 +0.6
4,395,863 + RR42_RS20315 0.56 +0.2
4,395,864 - RR42_RS20315 0.56 +0.6

Or see this region's nucleotide sequence