Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS15005 and RR42_RS15010 are separated by 59 nucleotides RR42_RS15010 and RR42_RS15015 overlap by 4 nucleotides RR42_RS15015 and RR42_RS15020 are separated by 358 nucleotides
RR42_RS15005: RR42_RS15005 - 1-deoxy-D-xylulose-5-phosphate synthase, at 3,244,088 to 3,245,998
_RS15005
RR42_RS15010: RR42_RS15010 - geranyl transferase, at 3,246,058 to 3,246,987
_RS15010
RR42_RS15015: RR42_RS15015 - exodeoxyribonuclease VII small subunit, at 3,246,984 to 3,247,274
_RS15015
RR42_RS15020: RR42_RS15020 - (2Fe-2S)-binding protein, at 3,247,633 to 3,248,736
_RS15020
Position (kb)
3246
3247
3248 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3247.109 kb on - strand, within RR42_RS15015 at 3247.263 kb on - strand at 3247.462 kb on + strand at 3247.462 kb on + strand at 3247.463 kb on - strand at 3247.631 kb on + strand at 3247.632 kb on - strand at 3247.697 kb on - strand at 3247.697 kb on - strand at 3247.951 kb on + strand, within RR42_RS15020 at 3247.952 kb on - strand, within RR42_RS15020 at 3248.122 kb on + strand, within RR42_RS15020 at 3248.122 kb on + strand, within RR42_RS15020 at 3248.122 kb on + strand, within RR42_RS15020 at 3248.158 kb on + strand, within RR42_RS15020 at 3248.159 kb on - strand, within RR42_RS15020 at 3248.159 kb on - strand, within RR42_RS15020 at 3248.185 kb on + strand, within RR42_RS15020 at 3248.186 kb on - strand, within RR42_RS15020 at 3248.197 kb on + strand, within RR42_RS15020 at 3248.197 kb on + strand, within RR42_RS15020 at 3248.198 kb on - strand, within RR42_RS15020 at 3248.198 kb on - strand, within RR42_RS15020
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 3,247,109 - RR42_RS15015 0.43 -1.1 3,247,263 - -0.0 3,247,462 + +1.1 3,247,462 + +0.3 3,247,463 - +1.3 3,247,631 + -1.7 3,247,632 - -1.1 3,247,697 - -0.4 3,247,697 - +0.3 3,247,951 + RR42_RS15020 0.29 -0.2 3,247,952 - RR42_RS15020 0.29 +0.9 3,248,122 + RR42_RS15020 0.44 +0.6 3,248,122 + RR42_RS15020 0.44 +0.9 3,248,122 + RR42_RS15020 0.44 -1.0 3,248,158 + RR42_RS15020 0.48 -0.3 3,248,159 - RR42_RS15020 0.48 -0.3 3,248,159 - RR42_RS15020 0.48 -1.6 3,248,185 + RR42_RS15020 0.50 +1.0 3,248,186 - RR42_RS15020 0.50 +1.0 3,248,197 + RR42_RS15020 0.51 +3.9 3,248,197 + RR42_RS15020 0.51 +0.3 3,248,198 - RR42_RS15020 0.51 -0.1 3,248,198 - RR42_RS15020 0.51 +0.9
Or see this region's nucleotide sequence