Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14820

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS14815 and RR42_RS14820 are separated by 63 nucleotidesRR42_RS14820 and RR42_RS14825 are separated by 65 nucleotides RR42_RS14815: RR42_RS14815 - hypothetical protein, at 3,192,261 to 3,192,947 _RS14815 RR42_RS14820: RR42_RS14820 - hypothetical protein, at 3,193,011 to 3,193,670 _RS14820 RR42_RS14825: RR42_RS14825 - membrane protein, at 3,193,736 to 3,195,541 _RS14825 Position (kb) 3193 3194Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3192.136 kb on + strandat 3192.142 kb on - strandat 3192.189 kb on - strandat 3192.210 kb on - strandat 3192.237 kb on - strandat 3192.369 kb on + strand, within RR42_RS14815at 3193.024 kb on + strandat 3193.024 kb on + strandat 3193.024 kb on + strandat 3193.069 kb on + strandat 3193.069 kb on + strandat 3193.410 kb on + strand, within RR42_RS14820at 3193.410 kb on + strand, within RR42_RS14820at 3193.411 kb on - strand, within RR42_RS14820at 3193.546 kb on - strand, within RR42_RS14820at 3193.633 kb on - strandat 3193.669 kb on - strandat 3193.669 kb on - strandat 3193.723 kb on + strandat 3193.724 kb on - strandat 3194.045 kb on - strand, within RR42_RS14825

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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3,192,136 + +0.3
3,192,142 - -0.2
3,192,189 - +0.3
3,192,210 - +0.5
3,192,237 - +0.2
3,192,369 + RR42_RS14815 0.16 +0.9
3,193,024 + +0.4
3,193,024 + +2.0
3,193,024 + +0.4
3,193,069 + +1.2
3,193,069 + -0.7
3,193,410 + RR42_RS14820 0.60 -1.8
3,193,410 + RR42_RS14820 0.60 -0.0
3,193,411 - RR42_RS14820 0.61 -0.3
3,193,546 - RR42_RS14820 0.81 -1.5
3,193,633 - +0.9
3,193,669 - -0.1
3,193,669 - -0.5
3,193,723 + -0.6
3,193,724 - +2.9
3,194,045 - RR42_RS14825 0.17 +0.7

Or see this region's nucleotide sequence