Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06930

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06920 and RR42_RS06925 are separated by 256 nucleotidesRR42_RS06925 and RR42_RS06930 are separated by 251 nucleotidesRR42_RS06930 and RR42_RS06935 are separated by 210 nucleotidesRR42_RS06935 and RR42_RS06940 overlap by 4 nucleotides RR42_RS06920: RR42_RS06920 - hypothetical protein, at 1,488,709 to 1,488,963 _RS06920 RR42_RS06925: RR42_RS06925 - hypothetical protein, at 1,489,220 to 1,489,402 _RS06925 RR42_RS06930: RR42_RS06930 - hypothetical protein, at 1,489,654 to 1,489,980 _RS06930 RR42_RS06935: RR42_RS06935 - hypothetical protein, at 1,490,191 to 1,490,961 _RS06935 RR42_RS06940: RR42_RS06940 - DNA methyltransferase, at 1,490,958 to 1,492,754 _RS06940 Position (kb) 1489 1490Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 1488.697 kb on + strandat 1488.698 kb on - strandat 1488.739 kb on + strand, within RR42_RS06920at 1488.739 kb on + strand, within RR42_RS06920at 1488.739 kb on + strand, within RR42_RS06920at 1488.740 kb on - strand, within RR42_RS06920at 1488.740 kb on - strand, within RR42_RS06920at 1488.740 kb on - strand, within RR42_RS06920at 1488.740 kb on - strand, within RR42_RS06920at 1488.740 kb on - strand, within RR42_RS06920at 1488.740 kb on - strand, within RR42_RS06920at 1488.740 kb on - strand, within RR42_RS06920at 1488.740 kb on - strand, within RR42_RS06920at 1488.741 kb on + strand, within RR42_RS06920at 1488.885 kb on + strand, within RR42_RS06920at 1488.886 kb on - strand, within RR42_RS06920at 1488.886 kb on - strand, within RR42_RS06920at 1488.996 kb on - strandat 1489.141 kb on - strandat 1489.213 kb on + strandat 1489.213 kb on + strandat 1489.214 kb on - strandat 1489.349 kb on + strand, within RR42_RS06925at 1489.417 kb on + strandat 1489.418 kb on - strandat 1489.446 kb on + strandat 1489.447 kb on - strandat 1489.501 kb on + strandat 1489.501 kb on + strandat 1489.501 kb on + strandat 1489.605 kb on + strandat 1489.716 kb on + strand, within RR42_RS06930at 1489.717 kb on - strand, within RR42_RS06930at 1489.873 kb on - strand, within RR42_RS06930at 1490.004 kb on + strandat 1490.005 kb on - strandat 1490.076 kb on + strandat 1490.076 kb on + strandat 1490.076 kb on + strandat 1490.077 kb on - strandat 1490.079 kb on + strandat 1490.080 kb on - strandat 1490.080 kb on - strandat 1490.281 kb on + strand, within RR42_RS06935at 1490.346 kb on - strand, within RR42_RS06935at 1490.346 kb on - strand, within RR42_RS06935at 1490.566 kb on + strand, within RR42_RS06935at 1490.566 kb on + strand, within RR42_RS06935at 1490.635 kb on + strand, within RR42_RS06935at 1490.758 kb on + strand, within RR42_RS06935at 1490.894 kb on + strandat 1490.933 kb on + strandat 1490.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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1,488,697 + +0.7
1,488,698 - +0.8
1,488,739 + RR42_RS06920 0.12 +1.4
1,488,739 + RR42_RS06920 0.12 -0.4
1,488,739 + RR42_RS06920 0.12 +0.4
1,488,740 - RR42_RS06920 0.12 +0.2
1,488,740 - RR42_RS06920 0.12 +0.7
1,488,740 - RR42_RS06920 0.12 +1.1
1,488,740 - RR42_RS06920 0.12 -0.9
1,488,740 - RR42_RS06920 0.12 -1.5
1,488,740 - RR42_RS06920 0.12 -1.0
1,488,740 - RR42_RS06920 0.12 -1.2
1,488,740 - RR42_RS06920 0.12 +0.5
1,488,741 + RR42_RS06920 0.13 -0.1
1,488,885 + RR42_RS06920 0.69 +0.8
1,488,886 - RR42_RS06920 0.69 -0.1
1,488,886 - RR42_RS06920 0.69 -1.1
1,488,996 - +5.4
1,489,141 - +2.3
1,489,213 + -0.0
1,489,213 + +0.4
1,489,214 - +0.7
1,489,349 + RR42_RS06925 0.70 -0.0
1,489,417 + +2.4
1,489,418 - +1.9
1,489,446 + +0.9
1,489,447 - +1.7
1,489,501 + -0.2
1,489,501 + +0.7
1,489,501 + +1.5
1,489,605 + +0.8
1,489,716 + RR42_RS06930 0.19 -1.5
1,489,717 - RR42_RS06930 0.19 +0.1
1,489,873 - RR42_RS06930 0.67 +1.3
1,490,004 + -0.2
1,490,005 - +0.5
1,490,076 + +0.4
1,490,076 + -0.4
1,490,076 + -1.1
1,490,077 - -0.3
1,490,079 + -0.4
1,490,080 - +0.3
1,490,080 - -0.5
1,490,281 + RR42_RS06935 0.12 +0.1
1,490,346 - RR42_RS06935 0.20 -0.2
1,490,346 - RR42_RS06935 0.20 -0.4
1,490,566 + RR42_RS06935 0.49 +0.6
1,490,566 + RR42_RS06935 0.49 +0.2
1,490,635 + RR42_RS06935 0.58 +1.0
1,490,758 + RR42_RS06935 0.74 -1.0
1,490,894 + +0.7
1,490,933 + -0.1
1,490,974 - +0.4

Or see this region's nucleotide sequence