Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06115 and RR42_RS06120 overlap by 89 nucleotides RR42_RS06120 and RR42_RS06125 are separated by 325 nucleotides
RR42_RS06115: RR42_RS06115 - competence protein ComEC, at 1,341,745 to 1,344,183
_RS06115
RR42_RS06120: RR42_RS06120 - transcriptional regulator, at 1,344,095 to 1,345,033
_RS06120
RR42_RS06125: RR42_RS06125 - phosphogluconate dehydratase, at 1,345,359 to 1,347,245
_RS06125
Position (kb)
1344
1345
1346 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1343.417 kb on - strand, within RR42_RS06115 at 1344.097 kb on - strand at 1344.097 kb on - strand at 1344.115 kb on + strand at 1344.116 kb on - strand at 1344.131 kb on - strand at 1344.340 kb on - strand, within RR42_RS06120 at 1344.640 kb on - strand, within RR42_RS06120 at 1344.970 kb on - strand at 1344.970 kb on - strand at 1345.008 kb on + strand at 1345.009 kb on - strand at 1345.009 kb on - strand at 1345.009 kb on - strand at 1345.119 kb on - strand at 1345.122 kb on + strand at 1345.122 kb on + strand at 1345.132 kb on - strand at 1345.135 kb on - strand at 1345.187 kb on + strand at 1345.212 kb on - strand at 1345.261 kb on - strand at 1345.262 kb on + strand at 1345.262 kb on + strand at 1345.263 kb on - strand at 1345.305 kb on + strand at 1345.306 kb on - strand at 1345.306 kb on - strand at 1345.306 kb on - strand at 1345.306 kb on - strand at 1345.438 kb on - strand at 1345.438 kb on - strand at 1345.590 kb on + strand, within RR42_RS06125 at 1345.591 kb on - strand, within RR42_RS06125
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 1,343,417 - RR42_RS06115 0.69 -1.4 1,344,097 - +0.0 1,344,097 - +0.6 1,344,115 + -3.0 1,344,116 - -1.4 1,344,131 - -1.2 1,344,340 - RR42_RS06120 0.26 -1.2 1,344,640 - RR42_RS06120 0.58 -0.5 1,344,970 - +0.3 1,344,970 - -1.7 1,345,008 + -1.0 1,345,009 - +0.3 1,345,009 - -1.2 1,345,009 - -1.1 1,345,119 - -3.0 1,345,122 + -0.6 1,345,122 + +0.3 1,345,132 - -0.5 1,345,135 - -2.0 1,345,187 + -0.0 1,345,212 - -1.5 1,345,261 - -0.2 1,345,262 + +0.0 1,345,262 + +0.3 1,345,263 - -1.1 1,345,305 + -1.3 1,345,306 - -1.7 1,345,306 - -1.4 1,345,306 - -1.7 1,345,306 - -3.1 1,345,438 - +0.2 1,345,438 - -0.6 1,345,590 + RR42_RS06125 0.12 -1.4 1,345,591 - RR42_RS06125 0.12 -1.7
Or see this region's nucleotide sequence