Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04415 and RR42_RS04420 are separated by 2 nucleotides RR42_RS04420 and RR42_RS04425 are separated by 8 nucleotides RR42_RS04425 and RR42_RS04430 are separated by 770 nucleotides
RR42_RS04415: RR42_RS04415 - ABC transporter, at 985,232 to 987,520
_RS04415
RR42_RS04420: RR42_RS04420 - required for efflux of an amino acid polymer <small>(from data)</small>, at 987,523 to 988,005
_RS04420
RR42_RS04425: RR42_RS04425 - hypothetical protein, at 988,014 to 988,877
_RS04425
RR42_RS04430: RR42_RS04430 - phosphoglycolate phosphatase, at 989,648 to 990,319
_RS04430
Position (kb) 988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 987.437 kb on + strand at 987.440 kb on + strand at 987.440 kb on + strand at 987.450 kb on - strand at 987.518 kb on + strand at 987.519 kb on - strand at 987.718 kb on - strand, within RR42_RS04420 at 987.811 kb on + strand, within RR42_RS04420 at 987.812 kb on - strand, within RR42_RS04420 at 987.906 kb on + strand, within RR42_RS04420 at 987.906 kb on + strand, within RR42_RS04420 at 987.906 kb on + strand, within RR42_RS04420 at 987.907 kb on - strand, within RR42_RS04420 at 987.907 kb on - strand, within RR42_RS04420 at 987.940 kb on + strand, within RR42_RS04420 at 988.072 kb on + strand at 988.072 kb on + strand at 988.072 kb on + strand at 988.072 kb on + strand at 988.097 kb on + strand at 988.097 kb on + strand at 988.097 kb on + strand at 988.097 kb on + strand at 988.097 kb on + strand at 988.097 kb on + strand at 988.098 kb on - strand at 988.098 kb on - strand at 988.098 kb on - strand at 988.117 kb on + strand, within RR42_RS04425 at 988.117 kb on + strand, within RR42_RS04425 at 988.117 kb on + strand, within RR42_RS04425 at 988.118 kb on - strand, within RR42_RS04425 at 988.118 kb on - strand, within RR42_RS04425 at 988.118 kb on - strand, within RR42_RS04425 at 988.118 kb on - strand, within RR42_RS04425 at 988.118 kb on - strand, within RR42_RS04425 at 988.118 kb on - strand, within RR42_RS04425 at 988.120 kb on + strand, within RR42_RS04425 at 988.190 kb on - strand, within RR42_RS04425 at 988.254 kb on + strand, within RR42_RS04425 at 988.254 kb on + strand, within RR42_RS04425 at 988.291 kb on - strand, within RR42_RS04425 at 988.339 kb on + strand, within RR42_RS04425 at 988.339 kb on + strand, within RR42_RS04425 at 988.339 kb on + strand, within RR42_RS04425 at 988.342 kb on + strand, within RR42_RS04425 at 988.342 kb on + strand, within RR42_RS04425 at 988.342 kb on + strand, within RR42_RS04425 at 988.342 kb on + strand, within RR42_RS04425 at 988.342 kb on + strand, within RR42_RS04425 at 988.343 kb on - strand, within RR42_RS04425 at 988.343 kb on - strand, within RR42_RS04425 at 988.343 kb on - strand, within RR42_RS04425 at 988.343 kb on - strand, within RR42_RS04425 at 988.343 kb on - strand, within RR42_RS04425 at 988.381 kb on + strand, within RR42_RS04425 at 988.382 kb on - strand, within RR42_RS04425 at 988.393 kb on + strand, within RR42_RS04425 at 988.393 kb on + strand, within RR42_RS04425 at 988.393 kb on + strand, within RR42_RS04425 at 988.393 kb on + strand, within RR42_RS04425 at 988.393 kb on + strand, within RR42_RS04425 at 988.394 kb on - strand, within RR42_RS04425 at 988.394 kb on - strand, within RR42_RS04425 at 988.394 kb on - strand, within RR42_RS04425 at 988.430 kb on - strand, within RR42_RS04425 at 988.465 kb on + strand, within RR42_RS04425 at 988.465 kb on + strand, within RR42_RS04425 at 988.535 kb on + strand, within RR42_RS04425 at 988.536 kb on - strand, within RR42_RS04425 at 988.536 kb on - strand, within RR42_RS04425 at 988.568 kb on - strand, within RR42_RS04425 at 988.568 kb on - strand, within RR42_RS04425 at 988.568 kb on - strand, within RR42_RS04425 at 988.568 kb on - strand, within RR42_RS04425 at 988.568 kb on - strand, within RR42_RS04425 at 988.568 kb on - strand, within RR42_RS04425 at 988.568 kb on - strand, within RR42_RS04425 at 988.593 kb on + strand, within RR42_RS04425 at 988.618 kb on + strand, within RR42_RS04425 at 988.627 kb on + strand, within RR42_RS04425 at 988.627 kb on + strand, within RR42_RS04425 at 988.627 kb on + strand, within RR42_RS04425 at 988.628 kb on - strand, within RR42_RS04425 at 988.628 kb on - strand, within RR42_RS04425 at 988.628 kb on - strand, within RR42_RS04425 at 988.628 kb on - strand, within RR42_RS04425 at 988.630 kb on + strand, within RR42_RS04425 at 988.630 kb on + strand, within RR42_RS04425 at 988.630 kb on + strand, within RR42_RS04425 at 988.647 kb on + strand, within RR42_RS04425 at 988.688 kb on + strand, within RR42_RS04425 at 988.690 kb on + strand, within RR42_RS04425 at 988.690 kb on + strand, within RR42_RS04425 at 988.690 kb on + strand, within RR42_RS04425 at 988.690 kb on + strand, within RR42_RS04425 at 988.690 kb on + strand, within RR42_RS04425 at 988.691 kb on - strand, within RR42_RS04425 at 988.691 kb on - strand, within RR42_RS04425 at 988.691 kb on - strand, within RR42_RS04425 at 988.691 kb on - strand, within RR42_RS04425 at 988.691 kb on - strand, within RR42_RS04425 at 988.691 kb on - strand, within RR42_RS04425 at 988.691 kb on - strand, within RR42_RS04425 at 988.691 kb on - strand, within RR42_RS04425 at 988.881 kb on + strand at 988.881 kb on + strand at 988.882 kb on - strand at 988.951 kb on + strand at 988.963 kb on - strand at 988.963 kb on - strand at 988.963 kb on - strand at 989.078 kb on - strand at 989.078 kb on - strand at 989.126 kb on - strand at 989.126 kb on - strand at 989.149 kb on + strand at 989.149 kb on + strand at 989.149 kb on + strand at 989.149 kb on + strand at 989.150 kb on - strand at 989.150 kb on - strand at 989.270 kb on + strand at 989.271 kb on - strand at 989.313 kb on + strand at 989.369 kb on + strand at 989.369 kb on + strand at 989.369 kb on + strand at 989.369 kb on + strand at 989.370 kb on - strand at 989.370 kb on - strand at 989.373 kb on + strand at 989.373 kb on + strand at 989.373 kb on + strand at 989.373 kb on + strand at 989.373 kb on + strand at 989.374 kb on - strand at 989.377 kb on + strand at 989.377 kb on + strand at 989.377 kb on + strand at 989.377 kb on + strand at 989.377 kb on + strand at 989.378 kb on - strand at 989.424 kb on + strand at 989.424 kb on + strand at 989.425 kb on - strand at 989.488 kb on + strand at 989.501 kb on + strand at 989.501 kb on + strand at 989.501 kb on + strand at 989.553 kb on - strand at 989.568 kb on - strand at 989.599 kb on - strand at 989.621 kb on + strand at 989.621 kb on + strand at 989.621 kb on + strand at 989.706 kb on + strand at 989.755 kb on - strand, within RR42_RS04430 at 989.807 kb on + strand, within RR42_RS04430 at 989.807 kb on + strand, within RR42_RS04430 at 989.808 kb on - strand, within RR42_RS04430 at 989.808 kb on - strand, within RR42_RS04430 at 989.823 kb on + strand, within RR42_RS04430 at 989.823 kb on + strand, within RR42_RS04430 at 989.823 kb on + strand, within RR42_RS04430 at 989.823 kb on + strand, within RR42_RS04430 at 989.823 kb on + strand, within RR42_RS04430 at 989.824 kb on - strand, within RR42_RS04430
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 987,437 + +0.3 987,440 + +0.0 987,440 + -0.6 987,450 - +0.0 987,518 + +0.3 987,519 - -0.1 987,718 - RR42_RS04420 0.40 -0.2 987,811 + RR42_RS04420 0.60 -1.2 987,812 - RR42_RS04420 0.60 +0.3 987,906 + RR42_RS04420 0.79 +0.0 987,906 + RR42_RS04420 0.79 +0.5 987,906 + RR42_RS04420 0.79 -0.4 987,907 - RR42_RS04420 0.80 +0.5 987,907 - RR42_RS04420 0.80 +0.5 987,940 + RR42_RS04420 0.86 -0.1 988,072 + -0.2 988,072 + -0.7 988,072 + -1.2 988,072 + +0.3 988,097 + -0.2 988,097 + +0.5 988,097 + -0.2 988,097 + +0.5 988,097 + -0.4 988,097 + -0.1 988,098 - -0.2 988,098 - -0.1 988,098 - +0.1 988,117 + RR42_RS04425 0.12 -0.6 988,117 + RR42_RS04425 0.12 -3.2 988,117 + RR42_RS04425 0.12 -1.0 988,118 - RR42_RS04425 0.12 -0.8 988,118 - RR42_RS04425 0.12 +1.2 988,118 - RR42_RS04425 0.12 +0.1 988,118 - RR42_RS04425 0.12 -0.6 988,118 - RR42_RS04425 0.12 +0.5 988,118 - RR42_RS04425 0.12 -0.7 988,120 + RR42_RS04425 0.12 -0.6 988,190 - RR42_RS04425 0.20 +0.2 988,254 + RR42_RS04425 0.28 +0.5 988,254 + RR42_RS04425 0.28 +0.7 988,291 - RR42_RS04425 0.32 -0.5 988,339 + RR42_RS04425 0.38 +0.4 988,339 + RR42_RS04425 0.38 -0.0 988,339 + RR42_RS04425 0.38 -1.0 988,342 + RR42_RS04425 0.38 -0.4 988,342 + RR42_RS04425 0.38 -1.5 988,342 + RR42_RS04425 0.38 -0.9 988,342 + RR42_RS04425 0.38 -0.5 988,342 + RR42_RS04425 0.38 -1.1 988,343 - RR42_RS04425 0.38 -0.8 988,343 - RR42_RS04425 0.38 +0.5 988,343 - RR42_RS04425 0.38 -0.4 988,343 - RR42_RS04425 0.38 -0.4 988,343 - RR42_RS04425 0.38 +0.9 988,381 + RR42_RS04425 0.42 +0.1 988,382 - RR42_RS04425 0.43 +0.2 988,393 + RR42_RS04425 0.44 -0.4 988,393 + RR42_RS04425 0.44 +1.6 988,393 + RR42_RS04425 0.44 -0.5 988,393 + RR42_RS04425 0.44 -0.4 988,393 + RR42_RS04425 0.44 -0.1 988,394 - RR42_RS04425 0.44 +0.3 988,394 - RR42_RS04425 0.44 -1.7 988,394 - RR42_RS04425 0.44 -0.3 988,430 - RR42_RS04425 0.48 -0.1 988,465 + RR42_RS04425 0.52 -2.0 988,465 + RR42_RS04425 0.52 -0.1 988,535 + RR42_RS04425 0.60 -2.6 988,536 - RR42_RS04425 0.60 -0.5 988,536 - RR42_RS04425 0.60 -1.6 988,568 - RR42_RS04425 0.64 -0.1 988,568 - RR42_RS04425 0.64 +0.1 988,568 - RR42_RS04425 0.64 -0.5 988,568 - RR42_RS04425 0.64 +0.4 988,568 - RR42_RS04425 0.64 -0.7 988,568 - RR42_RS04425 0.64 +0.7 988,568 - RR42_RS04425 0.64 +1.2 988,593 + RR42_RS04425 0.67 -0.1 988,618 + RR42_RS04425 0.70 +0.2 988,627 + RR42_RS04425 0.71 -0.5 988,627 + RR42_RS04425 0.71 +0.4 988,627 + RR42_RS04425 0.71 -0.3 988,628 - RR42_RS04425 0.71 -0.4 988,628 - RR42_RS04425 0.71 +0.1 988,628 - RR42_RS04425 0.71 +0.7 988,628 - RR42_RS04425 0.71 -1.2 988,630 + RR42_RS04425 0.71 -1.2 988,630 + RR42_RS04425 0.71 -0.7 988,630 + RR42_RS04425 0.71 -0.3 988,647 + RR42_RS04425 0.73 -0.1 988,688 + RR42_RS04425 0.78 -0.5 988,690 + RR42_RS04425 0.78 -0.2 988,690 + RR42_RS04425 0.78 -0.8 988,690 + RR42_RS04425 0.78 -0.2 988,690 + RR42_RS04425 0.78 -0.9 988,690 + RR42_RS04425 0.78 -0.3 988,691 - RR42_RS04425 0.78 -1.0 988,691 - RR42_RS04425 0.78 +0.1 988,691 - RR42_RS04425 0.78 +0.3 988,691 - RR42_RS04425 0.78 -0.0 988,691 - RR42_RS04425 0.78 +1.0 988,691 - RR42_RS04425 0.78 -0.2 988,691 - RR42_RS04425 0.78 -0.0 988,691 - RR42_RS04425 0.78 +0.2 988,881 + -0.8 988,881 + +0.3 988,882 - +1.6 988,951 + +0.8 988,963 - +0.1 988,963 - -0.0 988,963 - -0.1 989,078 - +0.5 989,078 - +0.3 989,126 - -0.2 989,126 - -0.0 989,149 + +0.2 989,149 + +0.7 989,149 + -0.4 989,149 + +0.0 989,150 - +2.6 989,150 - +1.4 989,270 + -1.0 989,271 - +0.9 989,313 + +0.4 989,369 + -0.7 989,369 + +0.0 989,369 + -1.9 989,369 + -1.9 989,370 - -0.1 989,370 - -0.0 989,373 + +0.1 989,373 + +1.2 989,373 + +0.5 989,373 + -0.3 989,373 + -0.1 989,374 - -1.0 989,377 + +0.3 989,377 + -0.3 989,377 + -1.0 989,377 + -0.1 989,377 + -0.9 989,378 - +0.1 989,424 + -1.0 989,424 + -0.4 989,425 - +0.1 989,488 + -0.0 989,501 + -0.1 989,501 + +0.2 989,501 + -0.7 989,553 - -1.0 989,568 - +1.0 989,599 - -1.0 989,621 + +0.1 989,621 + -0.3 989,621 + -0.3 989,706 + -0.0 989,755 - RR42_RS04430 0.16 -1.0 989,807 + RR42_RS04430 0.24 -0.2 989,807 + RR42_RS04430 0.24 -0.6 989,808 - RR42_RS04430 0.24 -0.3 989,808 - RR42_RS04430 0.24 +0.1 989,823 + RR42_RS04430 0.26 -0.8 989,823 + RR42_RS04430 0.26 -0.1 989,823 + RR42_RS04430 0.26 +2.2 989,823 + RR42_RS04430 0.26 -0.2 989,823 + RR42_RS04430 0.26 +0.4 989,824 - RR42_RS04430 0.26 +0.1
Or see this region's nucleotide sequence