Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04065 and RR42_RS04070 overlap by 4 nucleotides RR42_RS04070 and RR42_RS04075 are separated by 526 nucleotides RR42_RS04075 and RR42_RS04080 are separated by 40 nucleotides
RR42_RS04065: RR42_RS04065 - LysR family transcriptional regulator, at 899,703 to 900,566
_RS04065
RR42_RS04070: RR42_RS04070 - quinone oxidoreductase, at 900,563 to 901,567
_RS04070
RR42_RS04075: RR42_RS04075 - molecular chaperone GroES, at 902,094 to 902,384
_RS04075
RR42_RS04080: RR42_RS04080 - molecular chaperone GroEL, at 902,425 to 904,068
_RS04080
Position (kb) 900
901
902 Strain fitness (log2 ratio) -2
-1
0
1 at 899.673 kb on + strand at 899.682 kb on + strand at 899.717 kb on + strand at 899.718 kb on - strand at 899.913 kb on - strand, within RR42_RS04065 at 900.179 kb on + strand, within RR42_RS04065 at 900.180 kb on - strand, within RR42_RS04065 at 900.186 kb on + strand, within RR42_RS04065 at 900.187 kb on + strand, within RR42_RS04065 at 900.480 kb on + strand at 900.564 kb on + strand at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.856 kb on - strand, within RR42_RS04070 at 900.856 kb on - strand, within RR42_RS04070 at 900.909 kb on + strand, within RR42_RS04070 at 900.910 kb on - strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.951 kb on + strand, within RR42_RS04070 at 900.952 kb on - strand, within RR42_RS04070 at 900.952 kb on - strand, within RR42_RS04070 at 900.996 kb on + strand, within RR42_RS04070 at 901.172 kb on + strand, within RR42_RS04070 at 901.172 kb on + strand, within RR42_RS04070 at 901.173 kb on - strand, within RR42_RS04070 at 901.173 kb on - strand, within RR42_RS04070 at 901.299 kb on + strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.470 kb on - strand at 901.579 kb on + strand at 901.581 kb on + strand at 901.582 kb on - strand at 901.582 kb on - strand at 901.597 kb on + strand at 901.597 kb on + strand at 901.598 kb on - strand at 901.598 kb on - strand at 901.598 kb on - strand at 901.643 kb on + strand at 901.659 kb on + strand at 901.872 kb on + strand at 901.872 kb on + strand at 901.932 kb on + strand at 901.932 kb on + strand at 901.970 kb on + strand at 901.970 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 899,673 + -0.3 899,682 + +0.3 899,717 + +0.1 899,718 - -0.6 899,913 - RR42_RS04065 0.24 -0.5 900,179 + RR42_RS04065 0.55 +1.0 900,180 - RR42_RS04065 0.55 -0.5 900,186 + RR42_RS04065 0.56 -2.0 900,187 + RR42_RS04065 0.56 +1.3 900,480 + +1.2 900,564 + -1.9 900,780 + RR42_RS04070 0.22 +0.9 900,780 + RR42_RS04070 0.22 -0.4 900,780 + RR42_RS04070 0.22 -0.7 900,780 + RR42_RS04070 0.22 +0.2 900,856 - RR42_RS04070 0.29 -0.3 900,856 - RR42_RS04070 0.29 +0.1 900,909 + RR42_RS04070 0.34 -0.8 900,910 - RR42_RS04070 0.35 -1.3 900,939 + RR42_RS04070 0.37 -1.3 900,939 + RR42_RS04070 0.37 -0.5 900,939 + RR42_RS04070 0.37 -0.7 900,939 + RR42_RS04070 0.37 +0.6 900,940 - RR42_RS04070 0.38 -0.8 900,940 - RR42_RS04070 0.38 -0.2 900,940 - RR42_RS04070 0.38 -1.2 900,940 - RR42_RS04070 0.38 -0.8 900,951 + RR42_RS04070 0.39 -1.2 900,952 - RR42_RS04070 0.39 -0.6 900,952 - RR42_RS04070 0.39 -0.2 900,996 + RR42_RS04070 0.43 -0.0 901,172 + RR42_RS04070 0.61 +0.1 901,172 + RR42_RS04070 0.61 +0.4 901,173 - RR42_RS04070 0.61 +0.0 901,173 - RR42_RS04070 0.61 -0.3 901,299 + RR42_RS04070 0.73 +0.1 901,300 - RR42_RS04070 0.73 +0.7 901,300 - RR42_RS04070 0.73 +0.2 901,300 - RR42_RS04070 0.73 +0.5 901,470 - -0.3 901,579 + -0.5 901,581 + -0.2 901,582 - -1.6 901,582 - +0.8 901,597 + -0.6 901,597 + -0.2 901,598 - -0.3 901,598 - -0.5 901,598 - +0.3 901,643 + -0.7 901,659 + -0.1 901,872 + +0.0 901,872 + -0.2 901,932 + -1.9 901,932 + -0.0 901,970 + -1.0 901,970 + +1.6
Or see this region's nucleotide sequence