Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04055 and RR42_RS04060 are separated by 593 nucleotides RR42_RS04060 and RR42_RS04065 are separated by 148 nucleotides RR42_RS04065 and RR42_RS04070 overlap by 4 nucleotides
RR42_RS04055: RR42_RS04055 - hypothetical protein, at 898,284 to 898,745
_RS04055
RR42_RS04060: RR42_RS04060 - hypothetical protein, at 899,339 to 899,554
_RS04060
RR42_RS04065: RR42_RS04065 - LysR family transcriptional regulator, at 899,703 to 900,566
_RS04065
RR42_RS04070: RR42_RS04070 - quinone oxidoreductase, at 900,563 to 901,567
_RS04070
Position (kb) 899
900
901 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 898.778 kb on + strand at 898.779 kb on - strand at 898.779 kb on - strand at 898.820 kb on + strand at 898.821 kb on - strand at 898.821 kb on - strand at 898.859 kb on + strand at 898.875 kb on + strand at 899.071 kb on + strand at 899.072 kb on - strand at 899.212 kb on + strand at 899.212 kb on + strand at 899.212 kb on + strand at 899.212 kb on + strand at 899.213 kb on - strand at 899.213 kb on - strand at 899.213 kb on - strand at 899.242 kb on + strand at 899.242 kb on + strand at 899.450 kb on + strand, within RR42_RS04060 at 899.451 kb on - strand, within RR42_RS04060 at 899.457 kb on - strand, within RR42_RS04060 at 899.519 kb on + strand, within RR42_RS04060 at 899.673 kb on + strand at 899.682 kb on + strand at 899.717 kb on + strand at 899.718 kb on - strand at 899.913 kb on - strand, within RR42_RS04065 at 900.179 kb on + strand, within RR42_RS04065 at 900.180 kb on - strand, within RR42_RS04065 at 900.186 kb on + strand, within RR42_RS04065 at 900.187 kb on + strand, within RR42_RS04065 at 900.480 kb on + strand at 900.564 kb on + strand at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.856 kb on - strand, within RR42_RS04070 at 900.856 kb on - strand, within RR42_RS04070 at 900.909 kb on + strand, within RR42_RS04070 at 900.910 kb on - strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.951 kb on + strand, within RR42_RS04070 at 900.952 kb on - strand, within RR42_RS04070 at 900.952 kb on - strand, within RR42_RS04070 at 900.996 kb on + strand, within RR42_RS04070 at 901.172 kb on + strand, within RR42_RS04070 at 901.172 kb on + strand, within RR42_RS04070 at 901.173 kb on - strand, within RR42_RS04070 at 901.173 kb on - strand, within RR42_RS04070 at 901.299 kb on + strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 898,778 + -0.4 898,779 - +0.4 898,779 - -0.5 898,820 + +0.5 898,821 - -1.0 898,821 - -0.3 898,859 + -1.0 898,875 + +1.4 899,071 + -0.2 899,072 - -0.2 899,212 + -0.2 899,212 + +1.0 899,212 + +3.2 899,212 + -0.0 899,213 - -1.2 899,213 - -0.6 899,213 - +0.5 899,242 + +2.4 899,242 + +0.1 899,450 + RR42_RS04060 0.51 -0.4 899,451 - RR42_RS04060 0.52 +0.6 899,457 - RR42_RS04060 0.55 -0.2 899,519 + RR42_RS04060 0.83 -0.7 899,673 + -0.3 899,682 + +0.3 899,717 + +0.1 899,718 - -0.6 899,913 - RR42_RS04065 0.24 -0.5 900,179 + RR42_RS04065 0.55 +1.0 900,180 - RR42_RS04065 0.55 -0.5 900,186 + RR42_RS04065 0.56 -2.0 900,187 + RR42_RS04065 0.56 +1.3 900,480 + +1.2 900,564 + -1.9 900,780 + RR42_RS04070 0.22 +0.9 900,780 + RR42_RS04070 0.22 -0.4 900,780 + RR42_RS04070 0.22 -0.7 900,780 + RR42_RS04070 0.22 +0.2 900,856 - RR42_RS04070 0.29 -0.3 900,856 - RR42_RS04070 0.29 +0.1 900,909 + RR42_RS04070 0.34 -0.8 900,910 - RR42_RS04070 0.35 -1.3 900,939 + RR42_RS04070 0.37 -1.3 900,939 + RR42_RS04070 0.37 -0.5 900,939 + RR42_RS04070 0.37 -0.7 900,939 + RR42_RS04070 0.37 +0.6 900,940 - RR42_RS04070 0.38 -0.8 900,940 - RR42_RS04070 0.38 -0.2 900,940 - RR42_RS04070 0.38 -1.2 900,940 - RR42_RS04070 0.38 -0.8 900,951 + RR42_RS04070 0.39 -1.2 900,952 - RR42_RS04070 0.39 -0.6 900,952 - RR42_RS04070 0.39 -0.2 900,996 + RR42_RS04070 0.43 -0.0 901,172 + RR42_RS04070 0.61 +0.1 901,172 + RR42_RS04070 0.61 +0.4 901,173 - RR42_RS04070 0.61 +0.0 901,173 - RR42_RS04070 0.61 -0.3 901,299 + RR42_RS04070 0.73 +0.1 901,300 - RR42_RS04070 0.73 +0.7 901,300 - RR42_RS04070 0.73 +0.2 901,300 - RR42_RS04070 0.73 +0.5 901,470 - -0.3
Or see this region's nucleotide sequence