Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03655 and RR42_RS03660 are separated by 66 nucleotides RR42_RS03660 and RR42_RS03665 are separated by 80 nucleotides RR42_RS03665 and RR42_RS03670 are separated by 74 nucleotides RR42_RS03670 and RR42_RS03675 are separated by 594 nucleotides RR42_RS03675 and RR42_RS03680 are separated by 27 nucleotides
RR42_RS03655: RR42_RS03655 - hypothetical protein, at 811,547 to 811,921
_RS03655
RR42_RS03660: RR42_RS03660 - translation initiation factor 1, at 811,988 to 812,242
_RS03660
RR42_RS03665: RR42_RS03665 - translation initiation factor IF-1, at 812,323 to 812,544
_RS03665
RR42_RS03670: RR42_RS03670 - isochorismatase, at 812,619 to 812,813
_RS03670
RR42_RS03675: RR42_RS03675 - hypothetical protein, at 813,408 to 813,608
_RS03675
RR42_RS03680: RR42_RS03680 - hypothetical protein, at 813,636 to 813,878
_RS03680
Position (kb) 812
813 Strain fitness (log2 ratio) -2
-1
0
1
2 at 811.620 kb on + strand, within RR42_RS03655 at 811.620 kb on + strand, within RR42_RS03655 at 811.620 kb on + strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.621 kb on - strand, within RR42_RS03655 at 811.799 kb on + strand, within RR42_RS03655 at 811.800 kb on - strand, within RR42_RS03655 at 811.823 kb on + strand, within RR42_RS03655 at 811.824 kb on - strand, within RR42_RS03655 at 811.989 kb on + strand at 811.990 kb on - strand at 812.094 kb on + strand, within RR42_RS03660 at 812.095 kb on - strand, within RR42_RS03660 at 812.105 kb on + strand, within RR42_RS03660 at 812.105 kb on + strand, within RR42_RS03660 at 812.105 kb on + strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.106 kb on - strand, within RR42_RS03660 at 812.122 kb on + strand, within RR42_RS03660 at 812.123 kb on - strand, within RR42_RS03660 at 812.189 kb on + strand, within RR42_RS03660 at 812.301 kb on + strand at 812.322 kb on - strand at 812.327 kb on + strand at 812.328 kb on - strand at 812.328 kb on - strand at 812.367 kb on - strand, within RR42_RS03665 at 812.441 kb on + strand, within RR42_RS03665 at 812.498 kb on - strand, within RR42_RS03665 at 812.527 kb on + strand at 812.539 kb on - strand at 812.676 kb on - strand, within RR42_RS03670 at 812.764 kb on + strand, within RR42_RS03670 at 812.765 kb on - strand, within RR42_RS03670 at 812.796 kb on + strand at 812.797 kb on - strand at 812.818 kb on + strand at 812.818 kb on + strand at 812.850 kb on - strand at 812.858 kb on + strand at 812.859 kb on - strand at 813.017 kb on + strand at 813.017 kb on + strand at 813.063 kb on + strand at 813.064 kb on - strand at 813.167 kb on + strand at 813.168 kb on - strand at 813.244 kb on + strand at 813.244 kb on + strand at 813.286 kb on + strand at 813.286 kb on + strand at 813.287 kb on - strand at 813.295 kb on + strand at 813.295 kb on + strand at 813.296 kb on - strand at 813.296 kb on - strand at 813.296 kb on - strand at 813.438 kb on + strand, within RR42_RS03675 at 813.439 kb on - strand, within RR42_RS03675 at 813.439 kb on - strand, within RR42_RS03675 at 813.490 kb on - strand, within RR42_RS03675 at 813.490 kb on - strand, within RR42_RS03675 at 813.490 kb on - strand, within RR42_RS03675 at 813.492 kb on - strand, within RR42_RS03675 at 813.492 kb on - strand, within RR42_RS03675 at 813.500 kb on + strand, within RR42_RS03675 at 813.638 kb on - strand at 813.661 kb on + strand, within RR42_RS03680 at 813.661 kb on + strand, within RR42_RS03680 at 813.662 kb on - strand, within RR42_RS03680 at 813.662 kb on - strand, within RR42_RS03680
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 811,620 + RR42_RS03655 0.19 -0.5 811,620 + RR42_RS03655 0.19 -0.6 811,620 + RR42_RS03655 0.19 +0.5 811,621 - RR42_RS03655 0.20 -0.8 811,621 - RR42_RS03655 0.20 -0.9 811,621 - RR42_RS03655 0.20 +0.4 811,799 + RR42_RS03655 0.67 +0.0 811,800 - RR42_RS03655 0.67 +2.3 811,823 + RR42_RS03655 0.74 +0.2 811,824 - RR42_RS03655 0.74 -1.3 811,989 + +0.3 811,990 - +0.7 812,094 + RR42_RS03660 0.42 +2.4 812,095 - RR42_RS03660 0.42 -0.4 812,105 + RR42_RS03660 0.46 +0.5 812,105 + RR42_RS03660 0.46 -1.8 812,105 + RR42_RS03660 0.46 -0.0 812,106 - RR42_RS03660 0.46 -0.4 812,106 - RR42_RS03660 0.46 +1.1 812,106 - RR42_RS03660 0.46 +0.1 812,106 - RR42_RS03660 0.46 -0.5 812,122 + RR42_RS03660 0.53 +0.1 812,123 - RR42_RS03660 0.53 +0.6 812,189 + RR42_RS03660 0.79 -0.5 812,301 + +0.1 812,322 - +0.7 812,327 + -0.1 812,328 - -0.5 812,328 - -0.5 812,367 - RR42_RS03665 0.20 -0.1 812,441 + RR42_RS03665 0.53 -1.3 812,498 - RR42_RS03665 0.79 -0.4 812,527 + -0.0 812,539 - -0.1 812,676 - RR42_RS03670 0.29 -0.8 812,764 + RR42_RS03670 0.74 -1.9 812,765 - RR42_RS03670 0.75 -2.0 812,796 + +0.9 812,797 - -0.3 812,818 + +0.3 812,818 + -0.2 812,850 - +1.1 812,858 + -0.8 812,859 - +0.1 813,017 + +0.9 813,017 + -0.4 813,063 + -0.4 813,064 - -0.7 813,167 + +0.2 813,168 - +0.2 813,244 + +0.4 813,244 + -0.5 813,286 + +0.3 813,286 + -1.2 813,287 - +0.3 813,295 + -0.9 813,295 + -0.1 813,296 - +0.1 813,296 - -0.3 813,296 - -0.9 813,438 + RR42_RS03675 0.15 +1.0 813,439 - RR42_RS03675 0.15 -0.1 813,439 - RR42_RS03675 0.15 -0.2 813,490 - RR42_RS03675 0.41 +0.3 813,490 - RR42_RS03675 0.41 -0.0 813,490 - RR42_RS03675 0.41 -0.1 813,492 - RR42_RS03675 0.42 +0.9 813,492 - RR42_RS03675 0.42 -0.5 813,500 + RR42_RS03675 0.46 +0.5 813,638 - -0.7 813,661 + RR42_RS03680 0.10 +0.3 813,661 + RR42_RS03680 0.10 +0.3 813,662 - RR42_RS03680 0.11 +0.3 813,662 - RR42_RS03680 0.11 -1.3
Or see this region's nucleotide sequence