Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03650

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03635 and RR42_RS03640 are separated by 61 nucleotidesRR42_RS03640 and RR42_RS03645 are separated by 192 nucleotidesRR42_RS03645 and RR42_RS03650 are separated by 95 nucleotidesRR42_RS03650 and RR42_RS03655 are separated by 215 nucleotidesRR42_RS03655 and RR42_RS03660 are separated by 66 nucleotidesRR42_RS03660 and RR42_RS03665 are separated by 80 nucleotides RR42_RS03635: RR42_RS03635 - trypsin-like serine protease, at 809,187 to 810,089 _RS03635 RR42_RS03640: RR42_RS03640 - hypothetical protein, at 810,151 to 810,435 _RS03640 RR42_RS03645: RR42_RS03645 - hypothetical protein, at 810,628 to 810,951 _RS03645 RR42_RS03650: RR42_RS03650 - hypothetical protein, at 811,047 to 811,331 _RS03650 RR42_RS03655: RR42_RS03655 - hypothetical protein, at 811,547 to 811,921 _RS03655 RR42_RS03660: RR42_RS03660 - translation initiation factor 1, at 811,988 to 812,242 _RS03660 RR42_RS03665: RR42_RS03665 - translation initiation factor IF-1, at 812,323 to 812,544 _RS03665 Position (kb) 811 812Strain fitness (log2 ratio) -2 -1 0 1 2at 810.087 kb on + strandat 810.117 kb on + strandat 810.117 kb on + strandat 810.117 kb on + strandat 810.117 kb on + strandat 810.118 kb on - strandat 810.175 kb on + strandat 810.176 kb on - strandat 810.192 kb on - strand, within RR42_RS03640at 810.192 kb on - strand, within RR42_RS03640at 810.193 kb on + strand, within RR42_RS03640at 810.193 kb on + strand, within RR42_RS03640at 810.194 kb on - strand, within RR42_RS03640at 810.206 kb on - strand, within RR42_RS03640at 810.206 kb on - strand, within RR42_RS03640at 810.632 kb on + strandat 810.632 kb on + strandat 810.632 kb on + strandat 810.633 kb on - strandat 810.633 kb on - strandat 810.633 kb on - strandat 810.650 kb on + strandat 810.650 kb on + strandat 810.650 kb on + strandat 810.753 kb on + strand, within RR42_RS03645at 810.753 kb on + strand, within RR42_RS03645at 810.753 kb on + strand, within RR42_RS03645at 810.833 kb on + strand, within RR42_RS03645at 810.834 kb on - strand, within RR42_RS03645at 810.834 kb on - strand, within RR42_RS03645at 810.835 kb on + strand, within RR42_RS03645at 810.835 kb on + strand, within RR42_RS03645at 810.836 kb on - strand, within RR42_RS03645at 810.836 kb on - strand, within RR42_RS03645at 810.836 kb on - strand, within RR42_RS03645at 810.836 kb on - strand, within RR42_RS03645at 810.842 kb on + strand, within RR42_RS03645at 810.843 kb on - strand, within RR42_RS03645at 810.950 kb on - strandat 811.055 kb on + strandat 811.056 kb on - strandat 811.071 kb on + strandat 811.072 kb on - strandat 811.072 kb on - strandat 811.072 kb on - strandat 811.072 kb on - strandat 811.286 kb on + strand, within RR42_RS03650at 811.287 kb on - strand, within RR42_RS03650at 811.287 kb on - strand, within RR42_RS03650at 811.290 kb on - strand, within RR42_RS03650at 811.292 kb on + strand, within RR42_RS03650at 811.329 kb on + strandat 811.330 kb on - strandat 811.330 kb on - strandat 811.359 kb on - strandat 811.415 kb on - strandat 811.495 kb on - strandat 811.541 kb on + strandat 811.542 kb on - strandat 811.542 kb on - strandat 811.542 kb on - strandat 811.542 kb on - strandat 811.542 kb on - strandat 811.614 kb on - strand, within RR42_RS03655at 811.620 kb on + strand, within RR42_RS03655at 811.620 kb on + strand, within RR42_RS03655at 811.620 kb on + strand, within RR42_RS03655at 811.621 kb on - strand, within RR42_RS03655at 811.621 kb on - strand, within RR42_RS03655at 811.621 kb on - strand, within RR42_RS03655at 811.799 kb on + strand, within RR42_RS03655at 811.800 kb on - strand, within RR42_RS03655at 811.823 kb on + strand, within RR42_RS03655at 811.824 kb on - strand, within RR42_RS03655at 811.989 kb on + strandat 811.990 kb on - strandat 812.094 kb on + strand, within RR42_RS03660at 812.095 kb on - strand, within RR42_RS03660at 812.105 kb on + strand, within RR42_RS03660at 812.105 kb on + strand, within RR42_RS03660at 812.105 kb on + strand, within RR42_RS03660at 812.106 kb on - strand, within RR42_RS03660at 812.106 kb on - strand, within RR42_RS03660at 812.106 kb on - strand, within RR42_RS03660at 812.106 kb on - strand, within RR42_RS03660at 812.122 kb on + strand, within RR42_RS03660at 812.123 kb on - strand, within RR42_RS03660at 812.189 kb on + strand, within RR42_RS03660at 812.301 kb on + strandat 812.322 kb on - strandat 812.327 kb on + strandat 812.328 kb on - strandat 812.328 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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810,087 + -0.6
810,117 + +0.5
810,117 + -0.1
810,117 + +0.8
810,117 + -1.0
810,118 - -0.6
810,175 + -0.5
810,176 - -0.5
810,192 - RR42_RS03640 0.14 -0.1
810,192 - RR42_RS03640 0.14 -0.6
810,193 + RR42_RS03640 0.15 -0.0
810,193 + RR42_RS03640 0.15 -1.8
810,194 - RR42_RS03640 0.15 -0.2
810,206 - RR42_RS03640 0.19 -0.9
810,206 - RR42_RS03640 0.19 +0.2
810,632 + +0.2
810,632 + -0.3
810,632 + +0.6
810,633 - -0.2
810,633 - -1.7
810,633 - -0.6
810,650 + -0.6
810,650 + +0.8
810,650 + -2.2
810,753 + RR42_RS03645 0.39 -0.6
810,753 + RR42_RS03645 0.39 -1.0
810,753 + RR42_RS03645 0.39 +1.3
810,833 + RR42_RS03645 0.63 -0.0
810,834 - RR42_RS03645 0.64 -0.1
810,834 - RR42_RS03645 0.64 +1.3
810,835 + RR42_RS03645 0.64 -1.5
810,835 + RR42_RS03645 0.64 -0.5
810,836 - RR42_RS03645 0.64 -0.2
810,836 - RR42_RS03645 0.64 -0.1
810,836 - RR42_RS03645 0.64 +1.3
810,836 - RR42_RS03645 0.64 -0.3
810,842 + RR42_RS03645 0.66 +0.7
810,843 - RR42_RS03645 0.66 -0.1
810,950 - +0.3
811,055 + +0.0
811,056 - +0.3
811,071 + -1.7
811,072 - +0.2
811,072 - -0.0
811,072 - -0.3
811,072 - +1.5
811,286 + RR42_RS03650 0.84 -0.5
811,287 - RR42_RS03650 0.84 +0.2
811,287 - RR42_RS03650 0.84 -0.9
811,290 - RR42_RS03650 0.85 -0.6
811,292 + RR42_RS03650 0.86 +0.0
811,329 + -0.7
811,330 - +0.4
811,330 - +0.4
811,359 - +0.7
811,415 - +0.7
811,495 - +0.5
811,541 + -1.0
811,542 - -0.6
811,542 - -0.2
811,542 - -0.3
811,542 - -0.9
811,542 - -0.5
811,614 - RR42_RS03655 0.18 -1.3
811,620 + RR42_RS03655 0.19 -0.5
811,620 + RR42_RS03655 0.19 -0.6
811,620 + RR42_RS03655 0.19 +0.5
811,621 - RR42_RS03655 0.20 -0.8
811,621 - RR42_RS03655 0.20 -0.9
811,621 - RR42_RS03655 0.20 +0.4
811,799 + RR42_RS03655 0.67 +0.0
811,800 - RR42_RS03655 0.67 +2.3
811,823 + RR42_RS03655 0.74 +0.2
811,824 - RR42_RS03655 0.74 -1.3
811,989 + +0.3
811,990 - +0.7
812,094 + RR42_RS03660 0.42 +2.4
812,095 - RR42_RS03660 0.42 -0.4
812,105 + RR42_RS03660 0.46 +0.5
812,105 + RR42_RS03660 0.46 -1.8
812,105 + RR42_RS03660 0.46 -0.0
812,106 - RR42_RS03660 0.46 -0.4
812,106 - RR42_RS03660 0.46 +1.1
812,106 - RR42_RS03660 0.46 +0.1
812,106 - RR42_RS03660 0.46 -0.5
812,122 + RR42_RS03660 0.53 +0.1
812,123 - RR42_RS03660 0.53 +0.6
812,189 + RR42_RS03660 0.79 -0.5
812,301 + +0.1
812,322 - +0.7
812,327 + -0.1
812,328 - -0.5
812,328 - -0.5

Or see this region's nucleotide sequence