Experiment: exometabolites; 10% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03565 and RR42_RS03570 are separated by 396 nucleotides RR42_RS03570 and RR42_RS03575 are separated by 4 nucleotides
RR42_RS03565: RR42_RS03565 - hypothetical protein, at 794,026 to 794,631
_RS03565
RR42_RS03570: RR42_RS03570 - membrane protein, at 795,028 to 795,501
_RS03570
RR42_RS03575: RR42_RS03575 - type VI secretion protein, at 795,506 to 796,849
_RS03575
Position (kb) 795
796 Strain fitness (log2 ratio) -2
-1
0
1
2 at 794.107 kb on - strand, within RR42_RS03565 at 794.185 kb on + strand, within RR42_RS03565 at 794.185 kb on + strand, within RR42_RS03565 at 794.186 kb on - strand, within RR42_RS03565 at 794.212 kb on - strand, within RR42_RS03565 at 794.232 kb on - strand, within RR42_RS03565 at 794.731 kb on + strand at 794.732 kb on - strand at 794.750 kb on - strand at 794.849 kb on + strand at 794.849 kb on + strand at 794.849 kb on + strand at 795.014 kb on - strand at 795.019 kb on + strand at 795.166 kb on + strand, within RR42_RS03570 at 795.167 kb on - strand, within RR42_RS03570 at 795.167 kb on - strand, within RR42_RS03570 at 795.167 kb on - strand, within RR42_RS03570 at 795.205 kb on + strand, within RR42_RS03570 at 795.205 kb on + strand, within RR42_RS03570 at 795.385 kb on + strand, within RR42_RS03570 at 795.429 kb on - strand, within RR42_RS03570 at 795.486 kb on + strand at 795.517 kb on + strand at 795.594 kb on - strand at 795.601 kb on + strand at 796.103 kb on + strand, within RR42_RS03575 at 796.148 kb on - strand, within RR42_RS03575 at 796.214 kb on + strand, within RR42_RS03575 at 796.214 kb on + strand, within RR42_RS03575 at 796.215 kb on - strand, within RR42_RS03575 at 796.298 kb on + strand, within RR42_RS03575 at 796.298 kb on + strand, within RR42_RS03575 at 796.298 kb on + strand, within RR42_RS03575 at 796.299 kb on - strand, within RR42_RS03575 at 796.330 kb on - strand, within RR42_RS03575 at 796.379 kb on + strand, within RR42_RS03575 at 796.399 kb on + strand, within RR42_RS03575 at 796.400 kb on - strand, within RR42_RS03575 at 796.400 kb on - strand, within RR42_RS03575 at 796.400 kb on - strand, within RR42_RS03575
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate remove 794,107 - RR42_RS03565 0.13 +0.2 794,185 + RR42_RS03565 0.26 -1.0 794,185 + RR42_RS03565 0.26 +0.5 794,186 - RR42_RS03565 0.26 -1.0 794,212 - RR42_RS03565 0.31 +0.4 794,232 - RR42_RS03565 0.34 +1.7 794,731 + -0.3 794,732 - -0.6 794,750 - -2.2 794,849 + +2.0 794,849 + -0.1 794,849 + -0.5 795,014 - -0.3 795,019 + -0.0 795,166 + RR42_RS03570 0.29 -1.4 795,167 - RR42_RS03570 0.29 +0.6 795,167 - RR42_RS03570 0.29 -0.0 795,167 - RR42_RS03570 0.29 -0.7 795,205 + RR42_RS03570 0.37 -1.1 795,205 + RR42_RS03570 0.37 -0.7 795,385 + RR42_RS03570 0.75 -1.0 795,429 - RR42_RS03570 0.85 -1.0 795,486 + +0.4 795,517 + -0.1 795,594 - -1.3 795,601 + +0.7 796,103 + RR42_RS03575 0.44 +0.2 796,148 - RR42_RS03575 0.48 -0.9 796,214 + RR42_RS03575 0.53 -0.5 796,214 + RR42_RS03575 0.53 -0.9 796,215 - RR42_RS03575 0.53 +0.4 796,298 + RR42_RS03575 0.59 +0.6 796,298 + RR42_RS03575 0.59 -0.3 796,298 + RR42_RS03575 0.59 -0.5 796,299 - RR42_RS03575 0.59 -1.1 796,330 - RR42_RS03575 0.61 -2.1 796,379 + RR42_RS03575 0.65 -0.6 796,399 + RR42_RS03575 0.66 +0.8 796,400 - RR42_RS03575 0.67 -0.5 796,400 - RR42_RS03575 0.67 -1.6 796,400 - RR42_RS03575 0.67 -0.0
Or see this region's nucleotide sequence