Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02690

Experiment: exometabolites; 10% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02680 and RR42_RS02685 are separated by 89 nucleotidesRR42_RS02685 and RR42_RS02690 are separated by 26 nucleotidesRR42_RS02690 and RR42_RS02695 are separated by 127 nucleotidesRR42_RS02695 and RR42_RS02700 are separated by 175 nucleotides RR42_RS02680: RR42_RS02680 - phospholipid-binding protein, at 598,748 to 599,407 _RS02680 RR42_RS02685: RR42_RS02685 - phosphoglycerate mutase, at 599,497 to 600,171 _RS02685 RR42_RS02690: RR42_RS02690 - membrane protein, at 600,198 to 600,923 _RS02690 RR42_RS02695: RR42_RS02695 - lipoprotein, at 601,051 to 601,635 _RS02695 RR42_RS02700: RR42_RS02700 - ATP-dependent DNA helicase RuvB, at 601,811 to 602,866 _RS02700 Position (kb) 600 601Strain fitness (log2 ratio) -2 -1 0 1 2at 599.243 kb on + strand, within RR42_RS02680at 599.243 kb on + strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.244 kb on - strand, within RR42_RS02680at 599.286 kb on + strand, within RR42_RS02680at 599.366 kb on + strandat 599.366 kb on + strandat 599.366 kb on + strandat 599.366 kb on + strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.367 kb on - strandat 599.405 kb on + strandat 599.405 kb on + strandat 599.406 kb on - strandat 599.466 kb on - strandat 599.684 kb on - strand, within RR42_RS02685at 599.782 kb on + strand, within RR42_RS02685at 599.807 kb on - strand, within RR42_RS02685at 599.870 kb on - strand, within RR42_RS02685at 600.002 kb on - strand, within RR42_RS02685at 600.199 kb on + strandat 600.200 kb on - strandat 600.200 kb on - strandat 600.241 kb on + strandat 600.241 kb on + strandat 600.241 kb on + strandat 600.242 kb on - strandat 600.245 kb on - strandat 600.286 kb on + strand, within RR42_RS02690at 600.286 kb on + strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.287 kb on - strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.331 kb on + strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.332 kb on - strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.394 kb on + strand, within RR42_RS02690at 600.454 kb on - strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.496 kb on + strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.497 kb on - strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.557 kb on + strand, within RR42_RS02690at 600.589 kb on + strand, within RR42_RS02690at 600.698 kb on - strand, within RR42_RS02690at 600.703 kb on + strand, within RR42_RS02690at 600.703 kb on + strand, within RR42_RS02690at 600.871 kb on + strandat 600.871 kb on + strandat 600.871 kb on + strandat 600.871 kb on + strandat 600.874 kb on + strandat 600.875 kb on - strandat 600.879 kb on + strandat 600.880 kb on + strandat 600.881 kb on - strandat 600.881 kb on - strandat 600.881 kb on - strandat 600.955 kb on + strandat 600.956 kb on - strandat 600.956 kb on - strandat 600.956 kb on - strandat 600.992 kb on + strandat 601.052 kb on + strandat 601.053 kb on - strandat 601.156 kb on - strand, within RR42_RS02695at 601.156 kb on - strand, within RR42_RS02695at 601.239 kb on + strand, within RR42_RS02695at 601.245 kb on - strand, within RR42_RS02695at 601.245 kb on - strand, within RR42_RS02695at 601.328 kb on + strand, within RR42_RS02695at 601.331 kb on + strand, within RR42_RS02695at 601.332 kb on - strand, within RR42_RS02695at 601.544 kb on + strand, within RR42_RS02695at 601.545 kb on - strand, within RR42_RS02695at 601.786 kb on + strandat 601.786 kb on + strandat 601.786 kb on + strandat 601.787 kb on - strandat 601.790 kb on + strandat 601.790 kb on + strandat 601.790 kb on + strandat 601.790 kb on + strandat 601.790 kb on + strandat 601.790 kb on + strandat 601.791 kb on - strandat 601.791 kb on - strandat 601.791 kb on - strandat 601.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 10% oxygen; 5 mM nitrate
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599,243 + RR42_RS02680 0.75 -0.2
599,243 + RR42_RS02680 0.75 -0.5
599,244 - RR42_RS02680 0.75 +0.3
599,244 - RR42_RS02680 0.75 +0.3
599,244 - RR42_RS02680 0.75 +0.2
599,286 + RR42_RS02680 0.82 -0.0
599,366 + -0.1
599,366 + -0.8
599,366 + -0.6
599,366 + -0.2
599,367 - -1.6
599,367 - +0.2
599,367 - +0.8
599,367 - -0.4
599,367 - -1.9
599,367 - +0.2
599,367 - +0.6
599,405 + +0.8
599,405 + +0.8
599,406 - +0.2
599,466 - +0.6
599,684 - RR42_RS02685 0.28 +0.3
599,782 + RR42_RS02685 0.42 -0.8
599,807 - RR42_RS02685 0.46 +0.1
599,870 - RR42_RS02685 0.55 +0.9
600,002 - RR42_RS02685 0.75 -0.3
600,199 + +0.2
600,200 - +0.9
600,200 - -0.2
600,241 + +0.7
600,241 + -0.2
600,241 + -0.4
600,242 - -0.5
600,245 - -0.4
600,286 + RR42_RS02690 0.12 -0.1
600,286 + RR42_RS02690 0.12 -0.5
600,287 - RR42_RS02690 0.12 +0.0
600,287 - RR42_RS02690 0.12 -0.6
600,287 - RR42_RS02690 0.12 -0.4
600,287 - RR42_RS02690 0.12 +0.1
600,331 + RR42_RS02690 0.18 +1.2
600,331 + RR42_RS02690 0.18 -0.5
600,331 + RR42_RS02690 0.18 -0.1
600,331 + RR42_RS02690 0.18 -0.4
600,332 - RR42_RS02690 0.18 -1.8
600,332 - RR42_RS02690 0.18 -1.3
600,332 - RR42_RS02690 0.18 +0.6
600,332 - RR42_RS02690 0.18 +2.0
600,394 + RR42_RS02690 0.27 -0.3
600,394 + RR42_RS02690 0.27 -0.6
600,394 + RR42_RS02690 0.27 +0.3
600,394 + RR42_RS02690 0.27 -0.3
600,394 + RR42_RS02690 0.27 +0.3
600,454 - RR42_RS02690 0.35 -0.4
600,496 + RR42_RS02690 0.41 -2.0
600,496 + RR42_RS02690 0.41 +0.9
600,496 + RR42_RS02690 0.41 +1.1
600,496 + RR42_RS02690 0.41 -0.2
600,496 + RR42_RS02690 0.41 +0.3
600,496 + RR42_RS02690 0.41 -0.1
600,496 + RR42_RS02690 0.41 -0.7
600,496 + RR42_RS02690 0.41 +0.6
600,496 + RR42_RS02690 0.41 -1.0
600,496 + RR42_RS02690 0.41 -0.3
600,496 + RR42_RS02690 0.41 +2.6
600,496 + RR42_RS02690 0.41 -0.3
600,496 + RR42_RS02690 0.41 +1.1
600,496 + RR42_RS02690 0.41 -1.0
600,496 + RR42_RS02690 0.41 +0.1
600,496 + RR42_RS02690 0.41 +1.3
600,496 + RR42_RS02690 0.41 -0.1
600,497 - RR42_RS02690 0.41 -0.3
600,497 - RR42_RS02690 0.41 -1.9
600,497 - RR42_RS02690 0.41 -0.4
600,497 - RR42_RS02690 0.41 -0.3
600,497 - RR42_RS02690 0.41 +0.9
600,497 - RR42_RS02690 0.41 +0.1
600,497 - RR42_RS02690 0.41 -0.3
600,497 - RR42_RS02690 0.41 +0.3
600,497 - RR42_RS02690 0.41 -0.7
600,557 + RR42_RS02690 0.49 -0.0
600,557 + RR42_RS02690 0.49 -0.6
600,557 + RR42_RS02690 0.49 -0.5
600,557 + RR42_RS02690 0.49 +0.1
600,589 + RR42_RS02690 0.54 -1.1
600,698 - RR42_RS02690 0.69 -1.0
600,703 + RR42_RS02690 0.70 -2.4
600,703 + RR42_RS02690 0.70 -0.2
600,871 + -0.4
600,871 + +0.5
600,871 + +0.8
600,871 + +1.2
600,874 + -0.4
600,875 - -0.5
600,879 + +1.0
600,880 + -0.5
600,881 - -0.1
600,881 - +0.3
600,881 - -0.2
600,955 + +0.4
600,956 - +0.2
600,956 - +0.6
600,956 - -0.7
600,992 + +0.2
601,052 + -0.8
601,053 - +0.5
601,156 - RR42_RS02695 0.18 +1.7
601,156 - RR42_RS02695 0.18 -0.1
601,239 + RR42_RS02695 0.32 -1.9
601,245 - RR42_RS02695 0.33 -0.3
601,245 - RR42_RS02695 0.33 -1.3
601,328 + RR42_RS02695 0.47 +0.1
601,331 + RR42_RS02695 0.48 -0.1
601,332 - RR42_RS02695 0.48 +0.5
601,544 + RR42_RS02695 0.84 -0.6
601,545 - RR42_RS02695 0.84 +0.5
601,786 + -0.4
601,786 + +0.3
601,786 + -0.1
601,787 - +0.2
601,790 + +0.3
601,790 + -1.0
601,790 + +0.2
601,790 + +0.9
601,790 + -0.0
601,790 + +1.3
601,791 - +0.6
601,791 - -0.2
601,791 - -0.7
601,791 - +0.3

Or see this region's nucleotide sequence