Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2185 and DVU2186 are separated by 43 nucleotides DVU2186 and DVU2187 are separated by 428 nucleotides
DVU2185: DVU2185 - terminase, large subunit, putative (TIGR), at 2,281,873 to 2,283,798
DVU2185
DVU2186: DVU2186 - hypothetical protein (TIGR), at 2,283,842 to 2,284,855
DVU2186
DVU2187: DVU2187 - hypothetical protein (TIGR), at 2,285,284 to 2,285,814
DVU2187
Position (kb)
2283
2284
2285 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 2282.933 kb on + strand, within DVU2185 at 2282.962 kb on + strand, within DVU2185 at 2282.964 kb on - strand, within DVU2185 at 2283.063 kb on + strand, within DVU2185 at 2283.125 kb on - strand, within DVU2185 at 2283.339 kb on + strand, within DVU2185 at 2283.385 kb on - strand, within DVU2185 at 2283.385 kb on - strand, within DVU2185 at 2283.404 kb on + strand, within DVU2185 at 2283.412 kb on - strand, within DVU2185 at 2283.422 kb on + strand, within DVU2185 at 2283.422 kb on + strand, within DVU2185 at 2283.427 kb on + strand, within DVU2185 at 2283.430 kb on - strand, within DVU2185 at 2283.512 kb on - strand, within DVU2185 at 2283.522 kb on - strand, within DVU2185 at 2283.522 kb on - strand, within DVU2185 at 2283.607 kb on + strand at 2283.608 kb on - strand at 2283.616 kb on - strand at 2283.684 kb on + strand at 2283.692 kb on - strand at 2283.763 kb on + strand at 2283.874 kb on + strand at 2283.882 kb on - strand at 2283.889 kb on - strand at 2283.947 kb on - strand, within DVU2186 at 2283.952 kb on - strand, within DVU2186 at 2284.094 kb on - strand, within DVU2186 at 2284.141 kb on + strand, within DVU2186 at 2284.144 kb on - strand, within DVU2186 at 2284.156 kb on - strand, within DVU2186 at 2284.168 kb on + strand, within DVU2186 at 2284.168 kb on + strand, within DVU2186 at 2284.168 kb on + strand, within DVU2186 at 2284.176 kb on - strand, within DVU2186 at 2284.176 kb on - strand, within DVU2186 at 2284.176 kb on - strand, within DVU2186 at 2284.312 kb on - strand, within DVU2186 at 2284.326 kb on + strand, within DVU2186 at 2284.346 kb on - strand, within DVU2186 at 2284.360 kb on + strand, within DVU2186 at 2284.416 kb on - strand, within DVU2186 at 2284.469 kb on - strand, within DVU2186 at 2284.492 kb on + strand, within DVU2186 at 2284.558 kb on - strand, within DVU2186 at 2284.558 kb on - strand, within DVU2186 at 2284.583 kb on - strand, within DVU2186 at 2284.621 kb on - strand, within DVU2186 at 2284.748 kb on - strand, within DVU2186 at 2284.763 kb on + strand at 2284.857 kb on + strand at 2285.000 kb on - strand at 2285.128 kb on + strand at 2285.155 kb on + strand at 2285.155 kb on + strand at 2285.155 kb on + strand at 2285.183 kb on + strand at 2285.190 kb on + strand at 2285.234 kb on - strand at 2285.297 kb on + strand at 2285.442 kb on - strand, within DVU2187 at 2285.443 kb on - strand, within DVU2187 at 2285.453 kb on - strand, within DVU2187 at 2285.480 kb on + strand, within DVU2187 at 2285.530 kb on - strand, within DVU2187 at 2285.550 kb on - strand, within DVU2187 at 2285.572 kb on + strand, within DVU2187 at 2285.658 kb on + strand, within DVU2187 at 2285.658 kb on + strand, within DVU2187
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 2,282,933 + DVU2185 0.55 -0.3 2,282,962 + DVU2185 0.57 -1.4 2,282,964 - DVU2185 0.57 +0.1 2,283,063 + DVU2185 0.62 +5.1 2,283,125 - DVU2185 0.65 -0.4 2,283,339 + DVU2185 0.76 -2.0 2,283,385 - DVU2185 0.79 -0.0 2,283,385 - DVU2185 0.79 -1.0 2,283,404 + DVU2185 0.79 -0.7 2,283,412 - DVU2185 0.80 -1.0 2,283,422 + DVU2185 0.80 -1.2 2,283,422 + DVU2185 0.80 -1.3 2,283,427 + DVU2185 0.81 +0.2 2,283,430 - DVU2185 0.81 +0.6 2,283,512 - DVU2185 0.85 -2.0 2,283,522 - DVU2185 0.86 -2.0 2,283,522 - DVU2185 0.86 -1.1 2,283,607 + +4.1 2,283,608 - +0.7 2,283,616 - -0.6 2,283,684 + -2.4 2,283,692 - -1.2 2,283,763 + +0.4 2,283,874 + -1.0 2,283,882 - +1.3 2,283,889 - -1.0 2,283,947 - DVU2186 0.10 -0.6 2,283,952 - DVU2186 0.11 -0.8 2,284,094 - DVU2186 0.25 -0.5 2,284,141 + DVU2186 0.29 +1.4 2,284,144 - DVU2186 0.30 -0.7 2,284,156 - DVU2186 0.31 -2.3 2,284,168 + DVU2186 0.32 -1.1 2,284,168 + DVU2186 0.32 +1.3 2,284,168 + DVU2186 0.32 +2.8 2,284,176 - DVU2186 0.33 -0.4 2,284,176 - DVU2186 0.33 +1.7 2,284,176 - DVU2186 0.33 +0.7 2,284,312 - DVU2186 0.46 -1.0 2,284,326 + DVU2186 0.48 -0.6 2,284,346 - DVU2186 0.50 +7.1 2,284,360 + DVU2186 0.51 -0.9 2,284,416 - DVU2186 0.57 -2.9 2,284,469 - DVU2186 0.62 -0.1 2,284,492 + DVU2186 0.64 +0.2 2,284,558 - DVU2186 0.71 -0.9 2,284,558 - DVU2186 0.71 -1.8 2,284,583 - DVU2186 0.73 +0.9 2,284,621 - DVU2186 0.77 -1.0 2,284,748 - DVU2186 0.89 -1.1 2,284,763 + -1.6 2,284,857 + +1.8 2,285,000 - -0.2 2,285,128 + +1.4 2,285,155 + -1.4 2,285,155 + +1.5 2,285,155 + +1.6 2,285,183 + +1.8 2,285,190 + -1.2 2,285,234 - -0.6 2,285,297 + -0.8 2,285,442 - DVU2187 0.30 -0.5 2,285,443 - DVU2187 0.30 -1.1 2,285,453 - DVU2187 0.32 +0.3 2,285,480 + DVU2187 0.37 +0.2 2,285,530 - DVU2187 0.46 -1.1 2,285,550 - DVU2187 0.50 -0.3 2,285,572 + DVU2187 0.54 +3.5 2,285,658 + DVU2187 0.70 +2.3 2,285,658 + DVU2187 0.70 +0.0
Or see this region's nucleotide sequence