Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2186

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2185 and DVU2186 are separated by 43 nucleotidesDVU2186 and DVU2187 are separated by 428 nucleotides DVU2185: DVU2185 - terminase, large subunit, putative (TIGR), at 2,281,873 to 2,283,798 DVU2185 DVU2186: DVU2186 - hypothetical protein (TIGR), at 2,283,842 to 2,284,855 DVU2186 DVU2187: DVU2187 - hypothetical protein (TIGR), at 2,285,284 to 2,285,814 DVU2187 Position (kb) 2283 2284 2285Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 2282.933 kb on + strand, within DVU2185at 2282.962 kb on + strand, within DVU2185at 2282.964 kb on - strand, within DVU2185at 2283.063 kb on + strand, within DVU2185at 2283.125 kb on - strand, within DVU2185at 2283.339 kb on + strand, within DVU2185at 2283.385 kb on - strand, within DVU2185at 2283.385 kb on - strand, within DVU2185at 2283.404 kb on + strand, within DVU2185at 2283.412 kb on - strand, within DVU2185at 2283.422 kb on + strand, within DVU2185at 2283.422 kb on + strand, within DVU2185at 2283.427 kb on + strand, within DVU2185at 2283.430 kb on - strand, within DVU2185at 2283.512 kb on - strand, within DVU2185at 2283.522 kb on - strand, within DVU2185at 2283.522 kb on - strand, within DVU2185at 2283.607 kb on + strandat 2283.608 kb on - strandat 2283.616 kb on - strandat 2283.684 kb on + strandat 2283.692 kb on - strandat 2283.763 kb on + strandat 2283.874 kb on + strandat 2283.882 kb on - strandat 2283.889 kb on - strandat 2283.947 kb on - strand, within DVU2186at 2283.952 kb on - strand, within DVU2186at 2284.094 kb on - strand, within DVU2186at 2284.141 kb on + strand, within DVU2186at 2284.144 kb on - strand, within DVU2186at 2284.156 kb on - strand, within DVU2186at 2284.168 kb on + strand, within DVU2186at 2284.168 kb on + strand, within DVU2186at 2284.168 kb on + strand, within DVU2186at 2284.176 kb on - strand, within DVU2186at 2284.176 kb on - strand, within DVU2186at 2284.176 kb on - strand, within DVU2186at 2284.312 kb on - strand, within DVU2186at 2284.326 kb on + strand, within DVU2186at 2284.346 kb on - strand, within DVU2186at 2284.360 kb on + strand, within DVU2186at 2284.416 kb on - strand, within DVU2186at 2284.469 kb on - strand, within DVU2186at 2284.492 kb on + strand, within DVU2186at 2284.558 kb on - strand, within DVU2186at 2284.558 kb on - strand, within DVU2186at 2284.583 kb on - strand, within DVU2186at 2284.621 kb on - strand, within DVU2186at 2284.748 kb on - strand, within DVU2186at 2284.763 kb on + strandat 2284.857 kb on + strandat 2285.000 kb on - strandat 2285.128 kb on + strandat 2285.155 kb on + strandat 2285.155 kb on + strandat 2285.155 kb on + strandat 2285.183 kb on + strandat 2285.190 kb on + strandat 2285.234 kb on - strandat 2285.297 kb on + strandat 2285.442 kb on - strand, within DVU2187at 2285.443 kb on - strand, within DVU2187at 2285.453 kb on - strand, within DVU2187at 2285.480 kb on + strand, within DVU2187at 2285.530 kb on - strand, within DVU2187at 2285.550 kb on - strand, within DVU2187at 2285.572 kb on + strand, within DVU2187at 2285.658 kb on + strand, within DVU2187at 2285.658 kb on + strand, within DVU2187

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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2,282,933 + DVU2185 0.55 -0.3
2,282,962 + DVU2185 0.57 -1.4
2,282,964 - DVU2185 0.57 +0.1
2,283,063 + DVU2185 0.62 +5.1
2,283,125 - DVU2185 0.65 -0.4
2,283,339 + DVU2185 0.76 -2.0
2,283,385 - DVU2185 0.79 -0.0
2,283,385 - DVU2185 0.79 -1.0
2,283,404 + DVU2185 0.79 -0.7
2,283,412 - DVU2185 0.80 -1.0
2,283,422 + DVU2185 0.80 -1.2
2,283,422 + DVU2185 0.80 -1.3
2,283,427 + DVU2185 0.81 +0.2
2,283,430 - DVU2185 0.81 +0.6
2,283,512 - DVU2185 0.85 -2.0
2,283,522 - DVU2185 0.86 -2.0
2,283,522 - DVU2185 0.86 -1.1
2,283,607 + +4.1
2,283,608 - +0.7
2,283,616 - -0.6
2,283,684 + -2.4
2,283,692 - -1.2
2,283,763 + +0.4
2,283,874 + -1.0
2,283,882 - +1.3
2,283,889 - -1.0
2,283,947 - DVU2186 0.10 -0.6
2,283,952 - DVU2186 0.11 -0.8
2,284,094 - DVU2186 0.25 -0.5
2,284,141 + DVU2186 0.29 +1.4
2,284,144 - DVU2186 0.30 -0.7
2,284,156 - DVU2186 0.31 -2.3
2,284,168 + DVU2186 0.32 -1.1
2,284,168 + DVU2186 0.32 +1.3
2,284,168 + DVU2186 0.32 +2.8
2,284,176 - DVU2186 0.33 -0.4
2,284,176 - DVU2186 0.33 +1.7
2,284,176 - DVU2186 0.33 +0.7
2,284,312 - DVU2186 0.46 -1.0
2,284,326 + DVU2186 0.48 -0.6
2,284,346 - DVU2186 0.50 +7.1
2,284,360 + DVU2186 0.51 -0.9
2,284,416 - DVU2186 0.57 -2.9
2,284,469 - DVU2186 0.62 -0.1
2,284,492 + DVU2186 0.64 +0.2
2,284,558 - DVU2186 0.71 -0.9
2,284,558 - DVU2186 0.71 -1.8
2,284,583 - DVU2186 0.73 +0.9
2,284,621 - DVU2186 0.77 -1.0
2,284,748 - DVU2186 0.89 -1.1
2,284,763 + -1.6
2,284,857 + +1.8
2,285,000 - -0.2
2,285,128 + +1.4
2,285,155 + -1.4
2,285,155 + +1.5
2,285,155 + +1.6
2,285,183 + +1.8
2,285,190 + -1.2
2,285,234 - -0.6
2,285,297 + -0.8
2,285,442 - DVU2187 0.30 -0.5
2,285,443 - DVU2187 0.30 -1.1
2,285,453 - DVU2187 0.32 +0.3
2,285,480 + DVU2187 0.37 +0.2
2,285,530 - DVU2187 0.46 -1.1
2,285,550 - DVU2187 0.50 -0.3
2,285,572 + DVU2187 0.54 +3.5
2,285,658 + DVU2187 0.70 +2.3
2,285,658 + DVU2187 0.70 +0.0

Or see this region's nucleotide sequence