Experiment: BHIS with Anhydrotetracycline 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0340 and BT0341 are separated by 28 nucleotides BT0341 and BT0342 are separated by 213 nucleotides
BT0340: BT0340 - trimethylamine corrinoid protein 2 (TCP 2) (NCBI ptt file), at 407,471 to 409,279
BT0340
BT0341: BT0341 - Na+/glucose cotransporter (NCBI ptt file), at 409,308 to 410,879
BT0341
BT0342: BT0342 - conserved hypothetical protein (NCBI ptt file), at 411,093 to 411,866
BT0342
Position (kb) 409
410
411 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 408.704 kb on - strand, within BT0340 at 408.757 kb on + strand, within BT0340 at 408.757 kb on + strand, within BT0340 at 408.758 kb on - strand, within BT0340 at 408.873 kb on + strand, within BT0340 at 408.895 kb on + strand, within BT0340 at 408.896 kb on - strand, within BT0340 at 408.924 kb on + strand, within BT0340 at 409.065 kb on + strand, within BT0340 at 409.069 kb on + strand, within BT0340 at 409.100 kb on + strand at 409.101 kb on - strand at 409.219 kb on + strand at 409.231 kb on + strand at 409.278 kb on - strand at 409.298 kb on + strand at 409.383 kb on - strand at 409.384 kb on + strand at 409.494 kb on - strand, within BT0341 at 409.494 kb on - strand, within BT0341 at 409.501 kb on + strand, within BT0341 at 409.501 kb on + strand, within BT0341 at 409.688 kb on + strand, within BT0341 at 409.697 kb on + strand, within BT0341 at 409.759 kb on + strand, within BT0341 at 409.793 kb on - strand, within BT0341 at 409.804 kb on + strand, within BT0341 at 409.805 kb on - strand, within BT0341 at 409.931 kb on - strand, within BT0341 at 410.072 kb on - strand, within BT0341 at 410.303 kb on + strand, within BT0341 at 410.351 kb on + strand, within BT0341 at 410.355 kb on + strand, within BT0341 at 410.618 kb on + strand, within BT0341 at 410.626 kb on + strand, within BT0341 at 410.626 kb on + strand, within BT0341 at 410.627 kb on - strand, within BT0341 at 410.632 kb on + strand, within BT0341 at 410.633 kb on - strand, within BT0341 at 410.637 kb on + strand, within BT0341 at 410.637 kb on + strand, within BT0341 at 410.637 kb on + strand, within BT0341 at 410.637 kb on + strand, within BT0341 at 410.637 kb on + strand, within BT0341 at 410.700 kb on + strand, within BT0341 at 410.744 kb on - strand at 410.812 kb on + strand at 410.812 kb on + strand at 410.816 kb on + strand at 410.817 kb on - strand at 410.889 kb on - strand at 410.999 kb on - strand at 411.167 kb on + strand at 411.168 kb on - strand at 411.253 kb on - strand, within BT0342 at 411.399 kb on - strand, within BT0342 at 411.420 kb on + strand, within BT0342 at 411.546 kb on - strand, within BT0342 at 411.578 kb on + strand, within BT0342 at 411.624 kb on + strand, within BT0342 at 411.689 kb on + strand, within BT0342 at 411.755 kb on + strand, within BT0342 at 411.768 kb on + strand, within BT0342 at 411.845 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Anhydrotetracycline 0.00078125 mM remove 408,704 - BT0340 0.68 -1.8 408,757 + BT0340 0.71 -1.4 408,757 + BT0340 0.71 -2.0 408,758 - BT0340 0.71 -1.8 408,873 + BT0340 0.78 -1.4 408,895 + BT0340 0.79 +0.2 408,896 - BT0340 0.79 -2.0 408,924 + BT0340 0.80 +0.2 409,065 + BT0340 0.88 -2.1 409,069 + BT0340 0.88 +3.0 409,100 + -0.9 409,101 - +0.2 409,219 + +0.2 409,231 + -1.4 409,278 - -3.1 409,298 + +0.2 409,383 - -1.2 409,384 + -2.6 409,494 - BT0341 0.12 +1.2 409,494 - BT0341 0.12 +0.2 409,501 + BT0341 0.12 -2.8 409,501 + BT0341 0.12 -1.8 409,688 + BT0341 0.24 -2.8 409,697 + BT0341 0.25 -3.2 409,759 + BT0341 0.29 +1.2 409,793 - BT0341 0.31 -0.8 409,804 + BT0341 0.32 -1.0 409,805 - BT0341 0.32 -1.8 409,931 - BT0341 0.40 +1.2 410,072 - BT0341 0.49 +0.2 410,303 + BT0341 0.63 -1.7 410,351 + BT0341 0.66 -1.4 410,355 + BT0341 0.67 -1.9 410,618 + BT0341 0.83 -1.6 410,626 + BT0341 0.84 -2.4 410,626 + BT0341 0.84 -2.7 410,627 - BT0341 0.84 +0.8 410,632 + BT0341 0.84 -1.0 410,633 - BT0341 0.84 -0.8 410,637 + BT0341 0.85 -2.1 410,637 + BT0341 0.85 -2.4 410,637 + BT0341 0.85 -0.8 410,637 + BT0341 0.85 +0.2 410,637 + BT0341 0.85 -0.8 410,700 + BT0341 0.89 -1.2 410,744 - -1.9 410,812 + -0.2 410,812 + +0.2 410,816 + +0.8 410,817 - -1.0 410,889 - +0.8 410,999 - -1.2 411,167 + +1.2 411,168 - -1.6 411,253 - BT0342 0.21 -0.3 411,399 - BT0342 0.40 -0.3 411,420 + BT0342 0.42 -0.6 411,546 - BT0342 0.59 +2.2 411,578 + BT0342 0.63 -0.9 411,624 + BT0342 0.69 -3.7 411,689 + BT0342 0.77 -1.8 411,755 + BT0342 0.86 -0.9 411,768 + BT0342 0.87 -0.8 411,845 - -2.0
Or see this region's nucleotide sequence