Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0038

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0037 and b0983 overlap by 1 nucleotidesb0983 and DVUA0039 are separated by 0 nucleotides DVUA0037: DVUA0037 - sugar transferase domain protein (TIGR), at 44,190 to 45,644 DVUA0037 DVUA0038: b0983 - capsular polysaccharide transport protein (TIGR), at 45,644 to 46,450 b0983 DVUA0039: DVUA0039 - chain length determinant family protein (TIGR), at 46,451 to 47,953 DVUA0039 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 44.650 kb on - strand, within DVUA0037at 44.673 kb on + strand, within DVUA0037at 44.673 kb on + strand, within DVUA0037at 44.676 kb on - strand, within DVUA0037at 44.707 kb on + strand, within DVUA0037at 44.715 kb on - strand, within DVUA0037at 44.849 kb on + strand, within DVUA0037at 44.865 kb on + strand, within DVUA0037at 44.872 kb on + strand, within DVUA0037at 44.882 kb on - strand, within DVUA0037at 44.895 kb on + strand, within DVUA0037at 44.944 kb on + strand, within DVUA0037at 44.946 kb on + strand, within DVUA0037at 44.978 kb on - strand, within DVUA0037at 45.012 kb on + strand, within DVUA0037at 45.133 kb on - strand, within DVUA0037at 45.169 kb on + strand, within DVUA0037at 45.177 kb on - strand, within DVUA0037at 45.221 kb on - strand, within DVUA0037at 45.222 kb on - strand, within DVUA0037at 45.232 kb on - strand, within DVUA0037at 45.238 kb on - strand, within DVUA0037at 45.265 kb on - strand, within DVUA0037at 45.423 kb on + strand, within DVUA0037at 45.704 kb on - strandat 45.804 kb on + strand, within b0983at 45.812 kb on - strand, within b0983at 45.842 kb on + strand, within b0983at 45.842 kb on + strand, within b0983at 45.850 kb on - strand, within b0983at 45.859 kb on + strand, within b0983at 45.860 kb on + strand, within b0983at 45.901 kb on - strand, within b0983at 45.960 kb on + strand, within b0983at 46.093 kb on - strand, within b0983at 46.227 kb on + strand, within b0983at 46.234 kb on - strand, within b0983at 46.243 kb on + strand, within b0983at 46.245 kb on + strand, within b0983at 46.250 kb on + strand, within b0983at 46.267 kb on + strand, within b0983at 46.280 kb on + strand, within b0983at 46.345 kb on + strand, within b0983at 46.574 kb on - strandat 46.577 kb on + strandat 46.587 kb on + strandat 46.632 kb on + strand, within DVUA0039at 46.669 kb on + strand, within DVUA0039at 46.677 kb on - strand, within DVUA0039at 46.716 kb on + strand, within DVUA0039at 46.724 kb on - strand, within DVUA0039at 46.732 kb on - strand, within DVUA0039at 46.732 kb on - strand, within DVUA0039at 46.732 kb on - strand, within DVUA0039at 46.740 kb on + strand, within DVUA0039at 46.809 kb on - strand, within DVUA0039at 46.855 kb on + strand, within DVUA0039at 46.855 kb on + strand, within DVUA0039at 46.948 kb on + strand, within DVUA0039at 46.956 kb on - strand, within DVUA0039at 47.034 kb on - strand, within DVUA0039at 47.134 kb on - strand, within DVUA0039at 47.251 kb on + strand, within DVUA0039at 47.391 kb on + strand, within DVUA0039

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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44,650 - DVUA0037 0.32 -2.2
44,673 + DVUA0037 0.33 +1.8
44,673 + DVUA0037 0.33 +0.2
44,676 - DVUA0037 0.33 -0.1
44,707 + DVUA0037 0.36 -0.9
44,715 - DVUA0037 0.36 -1.0
44,849 + DVUA0037 0.45 -1.0
44,865 + DVUA0037 0.46 -0.6
44,872 + DVUA0037 0.47 -1.0
44,882 - DVUA0037 0.48 -0.9
44,895 + DVUA0037 0.48 -1.3
44,944 + DVUA0037 0.52 -0.7
44,946 + DVUA0037 0.52 +2.4
44,978 - DVUA0037 0.54 +0.2
45,012 + DVUA0037 0.56 -0.6
45,133 - DVUA0037 0.65 -0.5
45,169 + DVUA0037 0.67 -0.4
45,177 - DVUA0037 0.68 +1.6
45,221 - DVUA0037 0.71 -0.7
45,222 - DVUA0037 0.71 +0.8
45,232 - DVUA0037 0.72 -2.0
45,238 - DVUA0037 0.72 -1.8
45,265 - DVUA0037 0.74 +2.6
45,423 + DVUA0037 0.85 -0.7
45,704 - -0.8
45,804 + b0983 DVUA0038 0.20 -1.1
45,812 - b0983 DVUA0038 0.21 +2.0
45,842 + b0983 DVUA0038 0.25 -0.3
45,842 + b0983 DVUA0038 0.25 -1.1
45,850 - b0983 DVUA0038 0.26 -0.1
45,859 + b0983 DVUA0038 0.27 -2.0
45,860 + b0983 DVUA0038 0.27 -0.6
45,901 - b0983 DVUA0038 0.32 -1.2
45,960 + b0983 DVUA0038 0.39 -0.8
46,093 - b0983 DVUA0038 0.56 -0.3
46,227 + b0983 DVUA0038 0.72 -0.9
46,234 - b0983 DVUA0038 0.73 +1.1
46,243 + b0983 DVUA0038 0.74 +0.8
46,245 + b0983 DVUA0038 0.74 -0.5
46,250 + b0983 DVUA0038 0.75 -1.1
46,267 + b0983 DVUA0038 0.77 -0.5
46,280 + b0983 DVUA0038 0.79 -0.0
46,345 + b0983 DVUA0038 0.87 -0.0
46,574 - -1.3
46,577 + -0.5
46,587 + -2.1
46,632 + DVUA0039 0.12 +0.3
46,669 + DVUA0039 0.15 -0.7
46,677 - DVUA0039 0.15 -0.6
46,716 + DVUA0039 0.18 -0.9
46,724 - DVUA0039 0.18 +0.4
46,732 - DVUA0039 0.19 -0.5
46,732 - DVUA0039 0.19 -1.4
46,732 - DVUA0039 0.19 -0.8
46,740 + DVUA0039 0.19 +1.6
46,809 - DVUA0039 0.24 -0.3
46,855 + DVUA0039 0.27 -1.6
46,855 + DVUA0039 0.27 +0.5
46,948 + DVUA0039 0.33 -1.4
46,956 - DVUA0039 0.34 -0.8
47,034 - DVUA0039 0.39 +0.7
47,134 - DVUA0039 0.45 +0.2
47,251 + DVUA0039 0.53 -0.1
47,391 + DVUA0039 0.63 +2.4

Or see this region's nucleotide sequence