Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flrA and DVU0570 overlap by 4 nucleotides DVU0570 and ald are separated by 205 nucleotides ald and DVU0572 are separated by 406 nucleotides
DVU0569: flrA - sigma-54 dependent transcriptional regulator (TIGR), at 634,415 to 635,995
flrA
DVU0570: DVU0570 - hypothetical protein (TIGR), at 635,992 to 636,168
DVU0570
DVU0571: ald - alanine dehydrogenase (TIGR), at 636,374 to 637,486
ald
DVU0572: DVU0572 - hypothetical protein (TIGR), at 637,893 to 638,231
DVU0572
Position (kb) 636
637
638 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 635.440 kb on - strand, within flrA at 635.479 kb on + strand, within flrA at 635.518 kb on - strand, within flrA at 635.549 kb on - strand, within flrA at 635.553 kb on - strand, within flrA at 635.571 kb on + strand, within flrA at 635.631 kb on - strand, within flrA at 635.702 kb on + strand, within flrA at 635.775 kb on + strand, within flrA at 635.783 kb on - strand, within flrA at 635.785 kb on + strand, within flrA at 635.817 kb on + strand, within flrA at 635.836 kb on - strand, within flrA at 635.841 kb on - strand at 636.258 kb on + strand at 636.266 kb on - strand at 636.294 kb on + strand at 636.307 kb on + strand at 636.438 kb on + strand at 636.446 kb on - strand at 636.470 kb on + strand at 636.475 kb on + strand at 636.483 kb on - strand at 636.494 kb on - strand, within ald at 636.692 kb on + strand, within ald at 636.692 kb on + strand, within ald at 636.692 kb on + strand, within ald at 636.692 kb on + strand, within ald at 636.731 kb on + strand, within ald at 636.764 kb on + strand, within ald at 636.805 kb on - strand, within ald at 636.867 kb on + strand, within ald at 636.952 kb on + strand, within ald at 637.143 kb on - strand, within ald at 637.143 kb on - strand, within ald at 637.163 kb on - strand, within ald at 637.253 kb on + strand, within ald at 637.261 kb on - strand, within ald at 637.288 kb on + strand, within ald at 637.289 kb on + strand, within ald at 637.295 kb on + strand, within ald at 637.302 kb on + strand, within ald at 637.302 kb on + strand, within ald at 637.310 kb on - strand, within ald at 637.310 kb on - strand, within ald at 637.312 kb on + strand, within ald at 637.320 kb on - strand, within ald at 637.327 kb on + strand, within ald at 637.327 kb on + strand, within ald at 637.335 kb on - strand, within ald at 637.355 kb on + strand, within ald at 637.480 kb on + strand at 637.504 kb on - strand at 637.588 kb on - strand at 637.614 kb on + strand at 637.641 kb on - strand at 637.939 kb on + strand, within DVU0572 at 637.939 kb on + strand, within DVU0572 at 637.944 kb on + strand, within DVU0572 at 637.973 kb on - strand, within DVU0572 at 638.099 kb on - strand, within DVU0572 at 638.156 kb on + strand, within DVU0572 at 638.164 kb on - strand, within DVU0572 at 638.178 kb on + strand, within DVU0572 at 638.180 kb on + strand, within DVU0572 at 638.184 kb on - strand, within DVU0572 at 638.184 kb on - strand, within DVU0572 at 638.207 kb on - strand at 638.247 kb on + strand at 638.275 kb on - strand at 638.282 kb on - strand at 638.309 kb on + strand at 638.316 kb on + strand at 638.324 kb on - strand at 638.335 kb on + strand at 638.471 kb on + strand at 638.480 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 635,440 - flrA DVU0569 0.65 +0.7 635,479 + flrA DVU0569 0.67 -1.1 635,518 - flrA DVU0569 0.70 -0.6 635,549 - flrA DVU0569 0.72 -0.6 635,553 - flrA DVU0569 0.72 -0.9 635,571 + flrA DVU0569 0.73 -0.4 635,631 - flrA DVU0569 0.77 +1.0 635,702 + flrA DVU0569 0.81 +0.8 635,775 + flrA DVU0569 0.86 -1.5 635,783 - flrA DVU0569 0.87 -1.1 635,785 + flrA DVU0569 0.87 -0.4 635,817 + flrA DVU0569 0.89 +0.6 635,836 - flrA DVU0569 0.90 -1.6 635,841 - +1.8 636,258 + -1.4 636,266 - -3.1 636,294 + -0.8 636,307 + -1.1 636,438 + +3.4 636,446 - +1.0 636,470 + +1.7 636,475 + +2.0 636,483 - +0.5 636,494 - ald DVU0571 0.11 -0.3 636,692 + ald DVU0571 0.29 +2.4 636,692 + ald DVU0571 0.29 -1.4 636,692 + ald DVU0571 0.29 +1.7 636,692 + ald DVU0571 0.29 +0.9 636,731 + ald DVU0571 0.32 -0.7 636,764 + ald DVU0571 0.35 +0.8 636,805 - ald DVU0571 0.39 -2.5 636,867 + ald DVU0571 0.44 -1.5 636,952 + ald DVU0571 0.52 -0.0 637,143 - ald DVU0571 0.69 +2.7 637,143 - ald DVU0571 0.69 +1.8 637,163 - ald DVU0571 0.71 +0.4 637,253 + ald DVU0571 0.79 +0.2 637,261 - ald DVU0571 0.80 -0.3 637,288 + ald DVU0571 0.82 -0.4 637,289 + ald DVU0571 0.82 +1.4 637,295 + ald DVU0571 0.83 +3.0 637,302 + ald DVU0571 0.83 -0.2 637,302 + ald DVU0571 0.83 +1.8 637,310 - ald DVU0571 0.84 +3.1 637,310 - ald DVU0571 0.84 +1.6 637,312 + ald DVU0571 0.84 -1.0 637,320 - ald DVU0571 0.85 +1.0 637,327 + ald DVU0571 0.86 +1.2 637,327 + ald DVU0571 0.86 -0.5 637,335 - ald DVU0571 0.86 +1.7 637,355 + ald DVU0571 0.88 +1.1 637,480 + -0.5 637,504 - +0.4 637,588 - +0.5 637,614 + +1.0 637,641 - +1.4 637,939 + DVU0572 0.14 -0.7 637,939 + DVU0572 0.14 +2.7 637,944 + DVU0572 0.15 +1.7 637,973 - DVU0572 0.24 -3.4 638,099 - DVU0572 0.61 -1.6 638,156 + DVU0572 0.78 +0.5 638,164 - DVU0572 0.80 -1.5 638,178 + DVU0572 0.84 -0.4 638,180 + DVU0572 0.85 +1.4 638,184 - DVU0572 0.86 -1.0 638,184 - DVU0572 0.86 +0.7 638,207 - -1.3 638,247 + +2.0 638,275 - +1.5 638,282 - +0.2 638,309 + +0.5 638,316 + -0.9 638,324 - -1.3 638,335 + -1.9 638,471 + +2.2 638,480 - -0.9
Or see this region's nucleotide sequence