Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pabA and DVU0365 overlap by 4 nucleotides DVU0365 and DVU0366 overlap by 10 nucleotides DVU0366 and DVU0367 are separated by 266 nucleotides
DVU0364: pabA - para-aminobenzoate/anthranilate synthase glutamine amidotransferase (TIGR), at 413,780 to 414,334
pabA
DVU0365: DVU0365 - conserved hypothetical protein (TIGR), at 414,331 to 415,086
DVU0365
DVU0366: DVU0366 - 5-formyltetrahydrofolate cyclo-ligase family protein (TIGR), at 415,077 to 415,928
DVU0366
DVU0367: DVU0367 - Ser/Thr protein phosphatase family protein (TIGR), at 416,195 to 416,929
DVU0367
Position (kb) 415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 414.103 kb on + strand, within pabA at 414.149 kb on - strand, within pabA at 414.186 kb on - strand, within pabA at 414.224 kb on + strand, within pabA at 414.275 kb on - strand, within pabA at 414.312 kb on + strand at 414.345 kb on + strand at 414.350 kb on + strand at 414.373 kb on + strand at 414.425 kb on - strand, within DVU0365 at 414.430 kb on - strand, within DVU0365 at 414.430 kb on - strand, within DVU0365 at 414.438 kb on - strand, within DVU0365 at 414.438 kb on - strand, within DVU0365 at 414.440 kb on - strand, within DVU0365 at 414.440 kb on - strand, within DVU0365 at 414.440 kb on - strand, within DVU0365 at 414.501 kb on + strand, within DVU0365 at 414.509 kb on - strand, within DVU0365 at 414.509 kb on - strand, within DVU0365 at 414.602 kb on - strand, within DVU0365 at 414.627 kb on + strand, within DVU0365 at 414.634 kb on + strand, within DVU0365 at 414.708 kb on + strand, within DVU0365 at 414.713 kb on + strand, within DVU0365 at 414.750 kb on - strand, within DVU0365 at 414.838 kb on + strand, within DVU0365 at 414.887 kb on - strand, within DVU0365 at 415.004 kb on - strand, within DVU0365 at 415.018 kb on - strand at 415.075 kb on + strand at 415.097 kb on + strand at 415.100 kb on - strand at 415.102 kb on + strand at 415.105 kb on - strand at 415.125 kb on + strand at 415.335 kb on + strand, within DVU0366 at 415.335 kb on + strand, within DVU0366 at 415.343 kb on - strand, within DVU0366 at 415.395 kb on - strand, within DVU0366 at 415.395 kb on - strand, within DVU0366 at 415.400 kb on + strand, within DVU0366 at 415.408 kb on - strand, within DVU0366 at 415.433 kb on - strand, within DVU0366 at 415.440 kb on + strand, within DVU0366 at 415.448 kb on - strand, within DVU0366 at 415.466 kb on + strand, within DVU0366 at 415.513 kb on + strand, within DVU0366 at 415.526 kb on + strand, within DVU0366 at 415.537 kb on + strand, within DVU0366 at 415.590 kb on + strand, within DVU0366 at 415.663 kb on + strand, within DVU0366 at 415.676 kb on - strand, within DVU0366 at 415.742 kb on - strand, within DVU0366 at 415.785 kb on - strand, within DVU0366 at 415.814 kb on + strand, within DVU0366 at 415.846 kb on - strand at 415.880 kb on + strand at 415.937 kb on - strand at 416.058 kb on + strand at 416.081 kb on - strand at 416.097 kb on + strand at 416.146 kb on - strand at 416.146 kb on - strand at 416.273 kb on - strand, within DVU0367 at 416.313 kb on - strand, within DVU0367 at 416.313 kb on - strand, within DVU0367 at 416.376 kb on + strand, within DVU0367 at 416.405 kb on - strand, within DVU0367 at 416.485 kb on - strand, within DVU0367 at 416.498 kb on - strand, within DVU0367 at 416.552 kb on - strand, within DVU0367 at 416.559 kb on + strand, within DVU0367 at 416.567 kb on + strand, within DVU0367 at 416.604 kb on + strand, within DVU0367 at 416.615 kb on - strand, within DVU0367 at 416.636 kb on - strand, within DVU0367 at 416.686 kb on + strand, within DVU0367 at 416.687 kb on + strand, within DVU0367 at 416.695 kb on - strand, within DVU0367 at 416.708 kb on + strand, within DVU0367 at 416.720 kb on + strand, within DVU0367 at 416.738 kb on - strand, within DVU0367 at 416.767 kb on - strand, within DVU0367 at 416.813 kb on - strand, within DVU0367 at 416.839 kb on - strand, within DVU0367 at 416.847 kb on - strand, within DVU0367 at 416.847 kb on - strand, within DVU0367
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 414,103 + pabA DVU0364 0.58 -0.3 414,149 - pabA DVU0364 0.66 -0.6 414,186 - pabA DVU0364 0.73 -1.6 414,224 + pabA DVU0364 0.80 -1.3 414,275 - pabA DVU0364 0.89 -0.7 414,312 + -0.2 414,345 + -0.1 414,350 + +0.7 414,373 + -0.0 414,425 - DVU0365 0.12 +0.1 414,430 - DVU0365 0.13 +0.5 414,430 - DVU0365 0.13 +2.0 414,438 - DVU0365 0.14 -0.7 414,438 - DVU0365 0.14 +1.8 414,440 - DVU0365 0.14 +0.5 414,440 - DVU0365 0.14 +1.9 414,440 - DVU0365 0.14 -0.5 414,501 + DVU0365 0.22 +1.5 414,509 - DVU0365 0.24 +0.4 414,509 - DVU0365 0.24 +2.0 414,602 - DVU0365 0.36 +0.4 414,627 + DVU0365 0.39 +1.6 414,634 + DVU0365 0.40 -0.3 414,708 + DVU0365 0.50 +1.0 414,713 + DVU0365 0.51 +0.3 414,750 - DVU0365 0.55 +1.5 414,838 + DVU0365 0.67 -0.7 414,887 - DVU0365 0.74 +1.3 415,004 - DVU0365 0.89 +1.0 415,018 - +1.1 415,075 + -1.3 415,097 + -1.0 415,100 - +0.5 415,102 + -1.6 415,105 - -0.3 415,125 + -1.4 415,335 + DVU0366 0.30 -1.2 415,335 + DVU0366 0.30 -1.5 415,343 - DVU0366 0.31 -1.6 415,395 - DVU0366 0.37 +0.0 415,395 - DVU0366 0.37 +0.5 415,400 + DVU0366 0.38 +1.7 415,408 - DVU0366 0.39 +0.2 415,433 - DVU0366 0.42 +0.3 415,440 + DVU0366 0.43 +0.7 415,448 - DVU0366 0.44 -0.6 415,466 + DVU0366 0.46 +0.3 415,513 + DVU0366 0.51 +1.7 415,526 + DVU0366 0.53 -1.8 415,537 + DVU0366 0.54 -0.6 415,590 + DVU0366 0.60 -0.0 415,663 + DVU0366 0.69 +1.2 415,676 - DVU0366 0.70 -1.0 415,742 - DVU0366 0.78 -0.3 415,785 - DVU0366 0.83 +0.3 415,814 + DVU0366 0.87 -2.2 415,846 - -1.3 415,880 + -1.1 415,937 - -0.9 416,058 + -1.3 416,081 - +1.5 416,097 + +3.4 416,146 - +2.2 416,146 - +1.0 416,273 - DVU0367 0.11 +1.2 416,313 - DVU0367 0.16 +0.5 416,313 - DVU0367 0.16 -0.5 416,376 + DVU0367 0.25 +0.7 416,405 - DVU0367 0.29 -1.1 416,485 - DVU0367 0.39 +1.5 416,498 - DVU0367 0.41 -0.2 416,552 - DVU0367 0.49 -1.5 416,559 + DVU0367 0.50 -0.6 416,567 + DVU0367 0.51 -1.0 416,604 + DVU0367 0.56 -1.4 416,615 - DVU0367 0.57 +2.2 416,636 - DVU0367 0.60 -1.9 416,686 + DVU0367 0.67 -0.8 416,687 + DVU0367 0.67 -1.4 416,695 - DVU0367 0.68 -1.9 416,708 + DVU0367 0.70 +1.9 416,720 + DVU0367 0.71 +0.0 416,738 - DVU0367 0.74 +1.3 416,767 - DVU0367 0.78 +0.8 416,813 - DVU0367 0.84 +3.4 416,839 - DVU0367 0.88 -3.1 416,847 - DVU0367 0.89 +0.2 416,847 - DVU0367 0.89 +2.4
Or see this region's nucleotide sequence