Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0354

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0353 and DVU0354 are separated by 595 nucleotidesDVU0354 and DVU0355 are separated by 123 nucleotides DVU0353: DVU0353 - alcohol dehydrogenase, iron-containing (TIGR), at 400,830 to 401,903 DVU0353 DVU0354: DVU0354 - conserved domain protein (TIGR), at 402,499 to 403,404 DVU0354 DVU0355: DVU0355 - sensory box/GGDEF domain protein (TIGR), at 403,528 to 405,351 DVU0355 Position (kb) 402 403 404Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 401.505 kb on + strand, within DVU0353at 401.515 kb on + strand, within DVU0353at 401.540 kb on - strand, within DVU0353at 401.547 kb on + strand, within DVU0353at 401.555 kb on - strand, within DVU0353at 401.571 kb on - strand, within DVU0353at 401.595 kb on - strand, within DVU0353at 401.598 kb on + strand, within DVU0353at 401.606 kb on - strand, within DVU0353at 401.635 kb on - strand, within DVU0353at 401.700 kb on - strand, within DVU0353at 401.700 kb on - strand, within DVU0353at 401.754 kb on + strand, within DVU0353at 401.801 kb on - strandat 401.912 kb on + strandat 401.912 kb on + strandat 401.985 kb on - strandat 402.102 kb on - strandat 402.103 kb on + strandat 402.131 kb on + strandat 402.149 kb on + strandat 402.193 kb on - strandat 402.216 kb on - strandat 402.220 kb on + strandat 402.265 kb on - strandat 402.299 kb on - strandat 402.334 kb on + strandat 402.342 kb on - strandat 402.392 kb on + strandat 402.392 kb on + strandat 402.397 kb on + strandat 402.400 kb on - strandat 402.451 kb on + strandat 402.509 kb on - strandat 402.557 kb on - strandat 402.574 kb on + strandat 402.621 kb on - strand, within DVU0354at 402.628 kb on + strand, within DVU0354at 402.633 kb on + strand, within DVU0354at 402.638 kb on + strand, within DVU0354at 402.643 kb on + strand, within DVU0354at 402.645 kb on + strand, within DVU0354at 402.646 kb on - strand, within DVU0354at 402.646 kb on - strand, within DVU0354at 402.651 kb on - strand, within DVU0354at 402.677 kb on + strand, within DVU0354at 402.683 kb on + strand, within DVU0354at 402.685 kb on + strand, within DVU0354at 402.685 kb on - strand, within DVU0354at 402.817 kb on + strand, within DVU0354at 402.832 kb on + strand, within DVU0354at 402.837 kb on - strand, within DVU0354at 402.857 kb on + strand, within DVU0354at 402.882 kb on + strand, within DVU0354at 402.891 kb on - strand, within DVU0354at 402.903 kb on + strand, within DVU0354at 402.903 kb on + strand, within DVU0354at 402.911 kb on - strand, within DVU0354at 402.911 kb on - strand, within DVU0354at 402.911 kb on - strand, within DVU0354at 402.911 kb on - strand, within DVU0354at 402.911 kb on - strand, within DVU0354at 402.911 kb on - strand, within DVU0354at 402.939 kb on - strand, within DVU0354at 402.970 kb on + strand, within DVU0354at 403.003 kb on + strand, within DVU0354at 403.037 kb on + strand, within DVU0354at 403.065 kb on + strand, within DVU0354at 403.115 kb on - strand, within DVU0354at 403.204 kb on + strand, within DVU0354at 403.227 kb on - strand, within DVU0354at 403.227 kb on - strand, within DVU0354at 403.308 kb on + strand, within DVU0354at 403.349 kb on - strandat 403.438 kb on + strandat 403.451 kb on - strandat 403.496 kb on + strandat 403.508 kb on + strandat 403.508 kb on + strandat 403.508 kb on + strandat 403.508 kb on + strandat 403.526 kb on - strandat 403.546 kb on - strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.556 kb on - strandat 403.586 kb on + strandat 403.591 kb on + strandat 403.599 kb on - strandat 403.653 kb on + strandat 403.679 kb on + strandat 403.699 kb on + strandat 403.699 kb on + strandat 403.769 kb on + strand, within DVU0355at 403.832 kb on - strand, within DVU0355at 403.886 kb on - strand, within DVU0355at 403.904 kb on + strand, within DVU0355at 403.904 kb on + strand, within DVU0355at 403.904 kb on + strand, within DVU0355at 403.904 kb on + strand, within DVU0355at 403.912 kb on - strand, within DVU0355at 403.912 kb on - strand, within DVU0355at 403.930 kb on + strand, within DVU0355at 403.941 kb on + strand, within DVU0355at 403.943 kb on - strand, within DVU0355at 404.025 kb on + strand, within DVU0355at 404.087 kb on + strand, within DVU0355at 404.127 kb on + strand, within DVU0355at 404.141 kb on + strand, within DVU0355at 404.149 kb on - strand, within DVU0355at 404.233 kb on + strand, within DVU0355at 404.233 kb on + strand, within DVU0355at 404.233 kb on + strand, within DVU0355at 404.233 kb on + strand, within DVU0355at 404.288 kb on + strand, within DVU0355at 404.293 kb on + strand, within DVU0355at 404.329 kb on + strand, within DVU0355

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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401,505 + DVU0353 0.63 -1.9
401,515 + DVU0353 0.64 -0.7
401,540 - DVU0353 0.66 -1.3
401,547 + DVU0353 0.67 -1.7
401,555 - DVU0353 0.68 -1.4
401,571 - DVU0353 0.69 -0.8
401,595 - DVU0353 0.71 -1.2
401,598 + DVU0353 0.72 -1.2
401,606 - DVU0353 0.72 -0.8
401,635 - DVU0353 0.75 +2.6
401,700 - DVU0353 0.81 -1.6
401,700 - DVU0353 0.81 -0.1
401,754 + DVU0353 0.86 -0.1
401,801 - -1.3
401,912 + -1.6
401,912 + +1.4
401,985 - -1.0
402,102 - +1.8
402,103 + +0.3
402,131 + +2.7
402,149 + +0.2
402,193 - +1.0
402,216 - -1.1
402,220 + -0.1
402,265 - -1.3
402,299 - +1.9
402,334 + +2.6
402,342 - +2.6
402,392 + +0.6
402,392 + -2.4
402,397 + -1.3
402,400 - +2.5
402,451 + -1.6
402,509 - -1.0
402,557 - -0.7
402,574 + +0.5
402,621 - DVU0354 0.13 +1.8
402,628 + DVU0354 0.14 -0.9
402,633 + DVU0354 0.15 -1.4
402,638 + DVU0354 0.15 -0.1
402,643 + DVU0354 0.16 -0.2
402,645 + DVU0354 0.16 -1.3
402,646 - DVU0354 0.16 -0.8
402,646 - DVU0354 0.16 -1.4
402,651 - DVU0354 0.17 -0.2
402,677 + DVU0354 0.20 +1.6
402,683 + DVU0354 0.20 +0.4
402,685 + DVU0354 0.21 -0.0
402,685 - DVU0354 0.21 +2.3
402,817 + DVU0354 0.35 -0.6
402,832 + DVU0354 0.37 -1.0
402,837 - DVU0354 0.37 +2.6
402,857 + DVU0354 0.40 +1.0
402,882 + DVU0354 0.42 -1.2
402,891 - DVU0354 0.43 +1.3
402,903 + DVU0354 0.45 -1.6
402,903 + DVU0354 0.45 -2.0
402,911 - DVU0354 0.45 +2.6
402,911 - DVU0354 0.45 -0.4
402,911 - DVU0354 0.45 -0.6
402,911 - DVU0354 0.45 -0.6
402,911 - DVU0354 0.45 +3.4
402,911 - DVU0354 0.45 -1.5
402,939 - DVU0354 0.49 +2.0
402,970 + DVU0354 0.52 +0.6
403,003 + DVU0354 0.56 +1.5
403,037 + DVU0354 0.59 +1.8
403,065 + DVU0354 0.62 +2.4
403,115 - DVU0354 0.68 -1.0
403,204 + DVU0354 0.78 -0.2
403,227 - DVU0354 0.80 -0.2
403,227 - DVU0354 0.80 -1.1
403,308 + DVU0354 0.89 -0.9
403,349 - +5.0
403,438 + +0.2
403,451 - -1.5
403,496 + +1.9
403,508 + -0.8
403,508 + -1.3
403,508 + -0.5
403,508 + +0.9
403,526 - -0.6
403,546 - -0.8
403,556 - -1.0
403,556 - -1.6
403,556 - -0.8
403,586 + -1.0
403,591 + -0.9
403,599 - -0.8
403,653 + +1.6
403,679 + -0.4
403,699 + -2.1
403,699 + +1.1
403,769 + DVU0355 0.13 -0.7
403,832 - DVU0355 0.17 -0.2
403,886 - DVU0355 0.20 -1.0
403,904 + DVU0355 0.21 -0.8
403,904 + DVU0355 0.21 -1.3
403,904 + DVU0355 0.21 -2.0
403,904 + DVU0355 0.21 +1.1
403,912 - DVU0355 0.21 +1.3
403,912 - DVU0355 0.21 +0.5
403,930 + DVU0355 0.22 -0.0
403,941 + DVU0355 0.23 -1.3
403,943 - DVU0355 0.23 -0.6
404,025 + DVU0355 0.27 +1.8
404,087 + DVU0355 0.31 -1.5
404,127 + DVU0355 0.33 -2.3
404,141 + DVU0355 0.34 +0.1
404,149 - DVU0355 0.34 +0.6
404,233 + DVU0355 0.39 +0.6
404,233 + DVU0355 0.39 +3.0
404,233 + DVU0355 0.39 +2.4
404,233 + DVU0355 0.39 -0.4
404,288 + DVU0355 0.42 +0.4
404,293 + DVU0355 0.42 +1.8
404,329 + DVU0355 0.44 -1.6

Or see this region's nucleotide sequence