Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0230 and DVU0231 are separated by 80 nucleotides DVU0231 and DVU0232 overlap by 8 nucleotides DVU0232 and DORF26446 are separated by 142 nucleotides
DVU0230: DVU0230 - transcriptional regulator cII, putative (TIGR), at 265,802 to 266,266
DVU0230
DVU0231: DVU0231 - hypothetical protein (TIGR), at 266,347 to 266,571
DVU0231
DVU0232: DVU0232 - hypothetical protein (TIGR), at 266,564 to 266,812
DVU0232
DORF26446: DORF26446 - no description, at 266,955 to 267,194
DORF26446
Position (kb) 266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 265.380 kb on + strand at 265.426 kb on + strand at 265.431 kb on + strand at 265.431 kb on + strand at 265.434 kb on - strand at 265.434 kb on - strand at 265.434 kb on - strand at 265.446 kb on + strand at 265.449 kb on - strand at 265.483 kb on - strand at 265.498 kb on - strand at 265.501 kb on - strand at 265.510 kb on - strand at 265.606 kb on + strand at 265.728 kb on - strand at 265.728 kb on - strand at 265.729 kb on - strand at 265.730 kb on + strand at 265.739 kb on + strand at 265.745 kb on - strand at 265.772 kb on - strand at 265.810 kb on + strand at 265.874 kb on + strand, within DVU0230 at 265.895 kb on + strand, within DVU0230 at 265.900 kb on + strand, within DVU0230 at 265.940 kb on - strand, within DVU0230 at 265.940 kb on - strand, within DVU0230 at 266.024 kb on + strand, within DVU0230 at 266.032 kb on - strand, within DVU0230 at 266.032 kb on - strand, within DVU0230 at 266.032 kb on - strand, within DVU0230 at 266.038 kb on - strand, within DVU0230 at 266.042 kb on - strand, within DVU0230 at 266.190 kb on - strand, within DVU0230 at 266.197 kb on + strand, within DVU0230 at 266.205 kb on - strand, within DVU0230 at 266.233 kb on - strand at 266.287 kb on + strand at 266.360 kb on + strand at 266.368 kb on - strand at 266.381 kb on + strand, within DVU0231 at 266.473 kb on + strand, within DVU0231 at 266.473 kb on + strand, within DVU0231 at 266.501 kb on + strand, within DVU0231 at 266.509 kb on - strand, within DVU0231 at 266.509 kb on - strand, within DVU0231 at 266.525 kb on + strand, within DVU0231 at 266.538 kb on - strand, within DVU0231 at 266.617 kb on + strand, within DVU0232 at 266.633 kb on - strand, within DVU0232 at 266.807 kb on + strand at 266.807 kb on + strand at 266.920 kb on - strand at 266.922 kb on + strand at 266.922 kb on + strand at 266.922 kb on + strand at 266.922 kb on + strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.930 kb on - strand at 266.935 kb on - strand at 266.942 kb on - strand at 267.059 kb on + strand, within DORF26446 at 267.211 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.221 kb on + strand at 267.229 kb on - strand at 267.229 kb on - strand at 267.229 kb on - strand at 267.281 kb on + strand at 267.489 kb on + strand at 267.491 kb on + strand at 267.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 265,380 + -1.9 265,426 + -1.5 265,431 + +1.7 265,431 + -0.7 265,434 - -1.2 265,434 - -0.3 265,434 - -0.5 265,446 + -0.4 265,449 - -1.1 265,483 - +1.3 265,498 - -2.7 265,501 - -1.3 265,510 - +0.5 265,606 + +2.6 265,728 - +1.0 265,728 - +1.9 265,729 - -1.0 265,730 + -1.3 265,739 + -1.1 265,745 - +2.9 265,772 - -0.9 265,810 + +2.3 265,874 + DVU0230 0.15 -1.8 265,895 + DVU0230 0.20 +0.0 265,900 + DVU0230 0.21 -1.2 265,940 - DVU0230 0.30 +1.2 265,940 - DVU0230 0.30 -1.3 266,024 + DVU0230 0.48 -1.6 266,032 - DVU0230 0.49 +2.1 266,032 - DVU0230 0.49 -1.5 266,032 - DVU0230 0.49 -1.8 266,038 - DVU0230 0.51 +0.7 266,042 - DVU0230 0.52 +0.6 266,190 - DVU0230 0.83 +2.9 266,197 + DVU0230 0.85 -0.4 266,205 - DVU0230 0.87 +1.9 266,233 - +0.7 266,287 + +0.2 266,360 + -0.3 266,368 - +0.7 266,381 + DVU0231 0.15 -0.4 266,473 + DVU0231 0.56 -0.6 266,473 + DVU0231 0.56 +1.3 266,501 + DVU0231 0.68 -1.7 266,509 - DVU0231 0.72 -0.1 266,509 - DVU0231 0.72 +0.9 266,525 + DVU0231 0.79 -2.3 266,538 - DVU0231 0.85 -1.2 266,617 + DVU0232 0.21 -0.7 266,633 - DVU0232 0.28 -1.3 266,807 + -1.2 266,807 + -1.6 266,920 - -3.4 266,922 + +0.8 266,922 + -2.0 266,922 + +0.3 266,922 + -0.7 266,930 - -1.0 266,930 - -2.0 266,930 - +0.5 266,930 - +1.5 266,930 - -1.4 266,935 - -1.1 266,942 - +1.2 267,059 + DORF26446 0.43 -2.0 267,211 + +0.7 267,221 + -1.1 267,221 + -1.6 267,221 + -0.4 267,221 + -1.9 267,221 + -0.1 267,229 - +0.5 267,229 - +1.3 267,229 - -0.1 267,281 + +0.5 267,489 + +0.7 267,491 + +0.6 267,508 - -0.6
Or see this region's nucleotide sequence