Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0012 and DVU0013 are separated by 160 nucleotides DVU0013 and infA-1 are separated by 199 nucleotides infA-1 and lgt are separated by 115 nucleotides
DVU0012: DVU0012 - hypothetical protein (TIGR), at 15,099 to 16,301
DVU0012
DVU0013: DVU0013 - sensory box histidine kinase (TIGR), at 16,462 to 18,270
DVU0013
DVU0014: infA-1 - translation initiation factor IF-1 (TIGR), at 18,470 to 18,688
infA-1
DVU0015: lgt - prolipoprotein diacylglyceryl transferase (TIGR), at 18,804 to 19,595
lgt
Position (kb)
16
17
18
19 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 15.502 kb on - strand, within DVU0012 at 15.522 kb on - strand, within DVU0012 at 15.557 kb on - strand, within DVU0012 at 15.733 kb on - strand, within DVU0012 at 15.733 kb on - strand, within DVU0012 at 15.838 kb on - strand, within DVU0012 at 15.878 kb on + strand, within DVU0012 at 15.986 kb on - strand, within DVU0012 at 16.095 kb on + strand, within DVU0012 at 16.150 kb on + strand, within DVU0012 at 16.152 kb on + strand, within DVU0012 at 16.153 kb on - strand, within DVU0012 at 16.173 kb on + strand, within DVU0012 at 16.188 kb on - strand at 16.288 kb on - strand at 16.288 kb on - strand at 16.314 kb on + strand at 16.367 kb on - strand at 16.425 kb on - strand at 16.444 kb on + strand at 16.461 kb on + strand at 16.467 kb on - strand at 16.699 kb on - strand, within DVU0013 at 16.776 kb on + strand, within DVU0013 at 16.835 kb on + strand, within DVU0013 at 16.843 kb on - strand, within DVU0013 at 16.843 kb on - strand, within DVU0013 at 16.848 kb on + strand, within DVU0013 at 16.853 kb on + strand, within DVU0013 at 16.861 kb on - strand, within DVU0013 at 16.893 kb on + strand, within DVU0013 at 16.992 kb on - strand, within DVU0013 at 17.060 kb on + strand, within DVU0013 at 17.115 kb on - strand, within DVU0013 at 17.237 kb on - strand, within DVU0013 at 17.772 kb on - strand, within DVU0013 at 17.781 kb on + strand, within DVU0013 at 17.803 kb on + strand, within DVU0013 at 17.810 kb on + strand, within DVU0013 at 17.932 kb on + strand, within DVU0013 at 18.039 kb on - strand, within DVU0013 at 18.124 kb on + strand at 18.124 kb on + strand at 18.154 kb on + strand at 18.206 kb on - strand at 18.290 kb on + strand at 18.395 kb on + strand at 18.457 kb on - strand at 18.516 kb on - strand, within infA-1 at 18.635 kb on + strand, within infA-1 at 18.635 kb on + strand, within infA-1 at 18.656 kb on + strand, within infA-1 at 18.747 kb on - strand at 18.811 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 15,502 - DVU0012 0.33 -0.1 15,522 - DVU0012 0.35 +0.3 15,557 - DVU0012 0.38 -1.5 15,733 - DVU0012 0.53 -0.8 15,733 - DVU0012 0.53 -1.7 15,838 - DVU0012 0.61 -0.1 15,878 + DVU0012 0.65 -2.2 15,986 - DVU0012 0.74 -0.4 16,095 + DVU0012 0.83 -1.9 16,150 + DVU0012 0.87 -1.1 16,152 + DVU0012 0.88 -1.3 16,153 - DVU0012 0.88 -0.4 16,173 + DVU0012 0.89 -1.6 16,188 - -0.5 16,288 - -1.6 16,288 - -1.3 16,314 + -0.0 16,367 - +1.9 16,425 - -1.7 16,444 + +0.6 16,461 + -1.1 16,467 - -1.0 16,699 - DVU0013 0.13 +2.5 16,776 + DVU0013 0.17 -0.6 16,835 + DVU0013 0.21 -0.7 16,843 - DVU0013 0.21 +0.2 16,843 - DVU0013 0.21 +2.3 16,848 + DVU0013 0.21 -0.5 16,853 + DVU0013 0.22 +2.1 16,861 - DVU0013 0.22 -1.1 16,893 + DVU0013 0.24 -0.9 16,992 - DVU0013 0.29 -1.1 17,060 + DVU0013 0.33 +0.9 17,115 - DVU0013 0.36 -0.0 17,237 - DVU0013 0.43 +1.9 17,772 - DVU0013 0.72 +1.7 17,781 + DVU0013 0.73 +2.1 17,803 + DVU0013 0.74 +1.7 17,810 + DVU0013 0.75 +0.5 17,932 + DVU0013 0.81 -0.6 18,039 - DVU0013 0.87 +0.2 18,124 + +1.0 18,124 + +2.9 18,154 + +1.9 18,206 - +2.5 18,290 + +0.4 18,395 + -1.1 18,457 - +2.4 18,516 - infA-1 DVU0014 0.21 +1.1 18,635 + infA-1 DVU0014 0.75 +1.0 18,635 + infA-1 DVU0014 0.75 +1.1 18,656 + infA-1 DVU0014 0.85 -0.7 18,747 - -1.3 18,811 + +0.5
Or see this region's nucleotide sequence