Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2721 and DVU2722 are separated by 19 nucleotides DVU2722 and DVU2723 are separated by 19 nucleotides
DVU2721: DVU2721 - phage tail tape measure protein, TP901 family, putative (TIGR), at 2,824,045 to 2,825,985
DVU2721
DVU2722: DVU2722 - conserved hypothetical protein (TIGR), at 2,826,005 to 2,827,345
DVU2722
DVU2723: DVU2723 - tail protein, putative (TIGR), at 2,827,365 to 2,828,489
DVU2723
Position (kb)
2826
2827
2828 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2825.042 kb on - strand, within DVU2721 at 2825.082 kb on - strand, within DVU2721 at 2825.090 kb on - strand, within DVU2721 at 2825.200 kb on - strand, within DVU2721 at 2825.317 kb on + strand, within DVU2721 at 2825.361 kb on + strand, within DVU2721 at 2825.386 kb on + strand, within DVU2721 at 2825.402 kb on + strand, within DVU2721 at 2825.410 kb on - strand, within DVU2721 at 2825.493 kb on - strand, within DVU2721 at 2825.529 kb on - strand, within DVU2721 at 2825.555 kb on + strand, within DVU2721 at 2825.634 kb on + strand, within DVU2721 at 2825.645 kb on + strand, within DVU2721 at 2825.767 kb on + strand, within DVU2721 at 2825.767 kb on + strand, within DVU2721 at 2825.775 kb on - strand, within DVU2721 at 2825.784 kb on + strand, within DVU2721 at 2825.793 kb on + strand at 2825.907 kb on - strand at 2826.045 kb on - strand at 2826.178 kb on + strand, within DVU2722 at 2826.178 kb on + strand, within DVU2722 at 2826.184 kb on - strand, within DVU2722 at 2826.194 kb on - strand, within DVU2722 at 2826.217 kb on + strand, within DVU2722 at 2826.220 kb on - strand, within DVU2722 at 2826.222 kb on + strand, within DVU2722 at 2826.225 kb on - strand, within DVU2722 at 2826.261 kb on - strand, within DVU2722 at 2826.303 kb on - strand, within DVU2722 at 2826.357 kb on + strand, within DVU2722 at 2826.493 kb on - strand, within DVU2722 at 2826.502 kb on + strand, within DVU2722 at 2826.570 kb on - strand, within DVU2722 at 2826.575 kb on - strand, within DVU2722 at 2826.635 kb on - strand, within DVU2722 at 2826.649 kb on + strand, within DVU2722 at 2826.649 kb on + strand, within DVU2722 at 2826.649 kb on + strand, within DVU2722 at 2826.657 kb on - strand, within DVU2722 at 2826.657 kb on - strand, within DVU2722 at 2826.677 kb on + strand, within DVU2722 at 2826.677 kb on + strand, within DVU2722 at 2826.685 kb on - strand, within DVU2722 at 2826.685 kb on - strand, within DVU2722 at 2826.685 kb on - strand, within DVU2722 at 2826.714 kb on + strand, within DVU2722 at 2826.751 kb on + strand, within DVU2722 at 2826.756 kb on + strand, within DVU2722 at 2826.759 kb on - strand, within DVU2722 at 2826.759 kb on - strand, within DVU2722 at 2826.803 kb on + strand, within DVU2722 at 2826.833 kb on - strand, within DVU2722 at 2826.883 kb on + strand, within DVU2722 at 2826.900 kb on + strand, within DVU2722 at 2826.937 kb on + strand, within DVU2722 at 2827.098 kb on + strand, within DVU2722 at 2827.118 kb on + strand, within DVU2722 at 2827.157 kb on + strand, within DVU2722 at 2827.311 kb on + strand at 2827.316 kb on + strand at 2827.316 kb on + strand at 2827.319 kb on - strand at 2827.414 kb on - strand at 2827.443 kb on - strand at 2827.525 kb on + strand, within DVU2723 at 2827.529 kb on - strand, within DVU2723 at 2827.588 kb on + strand, within DVU2723 at 2827.617 kb on - strand, within DVU2723 at 2827.669 kb on - strand, within DVU2723 at 2827.669 kb on - strand, within DVU2723 at 2827.689 kb on + strand, within DVU2723 at 2827.707 kb on - strand, within DVU2723 at 2827.730 kb on + strand, within DVU2723 at 2827.848 kb on - strand, within DVU2723 at 2827.924 kb on - strand, within DVU2723 at 2827.942 kb on + strand, within DVU2723 at 2828.043 kb on + strand, within DVU2723 at 2828.077 kb on - strand, within DVU2723 at 2828.079 kb on - strand, within DVU2723 at 2828.107 kb on - strand, within DVU2723 at 2828.130 kb on + strand, within DVU2723 at 2828.217 kb on - strand, within DVU2723 at 2828.258 kb on + strand, within DVU2723 at 2828.310 kb on - strand, within DVU2723
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 2,825,042 - DVU2721 0.51 -1.0 2,825,082 - DVU2721 0.53 -1.3 2,825,090 - DVU2721 0.54 -0.8 2,825,200 - DVU2721 0.60 -0.7 2,825,317 + DVU2721 0.66 -0.8 2,825,361 + DVU2721 0.68 +2.3 2,825,386 + DVU2721 0.69 -1.4 2,825,402 + DVU2721 0.70 +0.7 2,825,410 - DVU2721 0.70 -1.3 2,825,493 - DVU2721 0.75 -0.1 2,825,529 - DVU2721 0.76 +0.4 2,825,555 + DVU2721 0.78 -0.9 2,825,634 + DVU2721 0.82 -0.5 2,825,645 + DVU2721 0.82 -0.8 2,825,767 + DVU2721 0.89 +1.5 2,825,767 + DVU2721 0.89 +0.8 2,825,775 - DVU2721 0.89 -1.1 2,825,784 + DVU2721 0.90 +3.5 2,825,793 + -0.0 2,825,907 - +0.2 2,826,045 - +3.5 2,826,178 + DVU2722 0.13 -1.3 2,826,178 + DVU2722 0.13 -0.5 2,826,184 - DVU2722 0.13 -1.1 2,826,194 - DVU2722 0.14 -0.0 2,826,217 + DVU2722 0.16 +1.9 2,826,220 - DVU2722 0.16 +0.7 2,826,222 + DVU2722 0.16 +1.5 2,826,225 - DVU2722 0.16 +0.2 2,826,261 - DVU2722 0.19 -0.5 2,826,303 - DVU2722 0.22 -2.8 2,826,357 + DVU2722 0.26 -1.4 2,826,493 - DVU2722 0.36 +0.1 2,826,502 + DVU2722 0.37 -0.3 2,826,570 - DVU2722 0.42 -1.2 2,826,575 - DVU2722 0.43 +0.7 2,826,635 - DVU2722 0.47 -0.8 2,826,649 + DVU2722 0.48 -0.2 2,826,649 + DVU2722 0.48 -1.3 2,826,649 + DVU2722 0.48 +0.7 2,826,657 - DVU2722 0.49 +3.5 2,826,657 - DVU2722 0.49 +1.5 2,826,677 + DVU2722 0.50 +1.4 2,826,677 + DVU2722 0.50 -0.7 2,826,685 - DVU2722 0.51 -0.2 2,826,685 - DVU2722 0.51 -0.4 2,826,685 - DVU2722 0.51 -1.5 2,826,714 + DVU2722 0.53 +0.2 2,826,751 + DVU2722 0.56 -1.1 2,826,756 + DVU2722 0.56 -1.1 2,826,759 - DVU2722 0.56 -0.5 2,826,759 - DVU2722 0.56 +3.1 2,826,803 + DVU2722 0.60 -0.0 2,826,833 - DVU2722 0.62 +1.1 2,826,883 + DVU2722 0.65 +0.0 2,826,900 + DVU2722 0.67 +1.5 2,826,937 + DVU2722 0.70 -2.3 2,827,098 + DVU2722 0.82 -2.3 2,827,118 + DVU2722 0.83 -1.1 2,827,157 + DVU2722 0.86 +1.6 2,827,311 + +1.6 2,827,316 + +0.2 2,827,316 + -0.7 2,827,319 - -0.7 2,827,414 - -0.2 2,827,443 - -0.8 2,827,525 + DVU2723 0.14 -0.6 2,827,529 - DVU2723 0.15 -2.1 2,827,588 + DVU2723 0.20 +0.2 2,827,617 - DVU2723 0.22 -0.7 2,827,669 - DVU2723 0.27 -1.2 2,827,669 - DVU2723 0.27 -0.9 2,827,689 + DVU2723 0.29 +0.5 2,827,707 - DVU2723 0.30 -1.1 2,827,730 + DVU2723 0.32 +1.1 2,827,848 - DVU2723 0.43 +0.2 2,827,924 - DVU2723 0.50 -0.6 2,827,942 + DVU2723 0.51 +0.4 2,828,043 + DVU2723 0.60 +0.6 2,828,077 - DVU2723 0.63 +1.6 2,828,079 - DVU2723 0.63 -0.4 2,828,107 - DVU2723 0.66 -0.3 2,828,130 + DVU2723 0.68 -0.7 2,828,217 - DVU2723 0.76 -1.5 2,828,258 + DVU2723 0.79 -1.3 2,828,310 - DVU2723 0.84 +1.2
Or see this region's nucleotide sequence