Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2663 and pstB-2 are separated by 2 nucleotides pstB-2 and DVU2665 are separated by 31 nucleotides DVU2665 and DVU2666 are separated by 35 nucleotides DVU2666 and pstS overlap by 4 nucleotides
DVU2663: DVU2663 - conserved hypothetical protein (TIGR), at 2,774,924 to 2,775,400
DVU2663
DVU2664: pstB-2 - phosphate ABC transporter, ATP-binding protein (TIGR), at 2,775,403 to 2,776,269
pstB-2
DVU2665: DVU2665 - phosphate ABC transporter, permease protein, putative (TIGR), at 2,776,301 to 2,777,185
DVU2665
DVU2666: DVU2666 - phosphate ABC transporter, permease protein, putative (TIGR), at 2,777,221 to 2,778,096
DVU2666
DVU2667: pstS - phosphate ABC transporter, periplasmic phosphate-binding protein (TIGR), at 2,778,093 to 2,778,971
pstS
Position (kb)
2776
2777
2778 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2775.341 kb on + strand, within DVU2663 at 2775.354 kb on + strand at 2775.361 kb on + strand at 2775.362 kb on - strand at 2775.406 kb on + strand at 2775.444 kb on + strand at 2775.452 kb on - strand at 2775.468 kb on - strand at 2775.476 kb on - strand at 2775.495 kb on + strand, within pstB-2 at 2775.505 kb on + strand, within pstB-2 at 2775.546 kb on + strand, within pstB-2 at 2775.554 kb on + strand, within pstB-2 at 2775.602 kb on + strand, within pstB-2 at 2775.627 kb on - strand, within pstB-2 at 2775.684 kb on - strand, within pstB-2 at 2775.703 kb on - strand, within pstB-2 at 2775.705 kb on + strand, within pstB-2 at 2775.705 kb on + strand, within pstB-2 at 2775.705 kb on + strand, within pstB-2 at 2775.705 kb on + strand, within pstB-2 at 2775.713 kb on - strand, within pstB-2 at 2775.713 kb on - strand, within pstB-2 at 2775.713 kb on - strand, within pstB-2 at 2775.730 kb on + strand, within pstB-2 at 2775.730 kb on + strand, within pstB-2 at 2775.738 kb on + strand, within pstB-2 at 2775.823 kb on + strand, within pstB-2 at 2775.826 kb on - strand, within pstB-2 at 2775.833 kb on - strand, within pstB-2 at 2775.900 kb on + strand, within pstB-2 at 2775.908 kb on - strand, within pstB-2 at 2775.926 kb on + strand, within pstB-2 at 2776.009 kb on + strand, within pstB-2 at 2776.021 kb on + strand, within pstB-2 at 2776.107 kb on - strand, within pstB-2 at 2776.176 kb on + strand, within pstB-2 at 2776.185 kb on + strand at 2776.264 kb on - strand at 2776.283 kb on - strand at 2776.292 kb on + strand at 2776.320 kb on - strand at 2776.339 kb on - strand at 2776.413 kb on + strand, within DVU2665 at 2776.473 kb on + strand, within DVU2665 at 2776.507 kb on - strand, within DVU2665 at 2776.507 kb on - strand, within DVU2665 at 2776.582 kb on + strand, within DVU2665 at 2776.588 kb on - strand, within DVU2665 at 2776.588 kb on - strand, within DVU2665 at 2776.588 kb on - strand, within DVU2665 at 2776.698 kb on + strand, within DVU2665 at 2776.803 kb on - strand, within DVU2665 at 2776.832 kb on + strand, within DVU2665 at 2776.866 kb on - strand, within DVU2665 at 2776.929 kb on + strand, within DVU2665 at 2776.937 kb on - strand, within DVU2665 at 2776.992 kb on + strand, within DVU2665 at 2777.000 kb on - strand, within DVU2665 at 2777.010 kb on - strand, within DVU2665 at 2777.018 kb on - strand, within DVU2665 at 2777.019 kb on + strand, within DVU2665 at 2777.087 kb on + strand, within DVU2665 at 2777.123 kb on + strand at 2777.169 kb on + strand at 2777.459 kb on - strand, within DVU2666 at 2777.489 kb on + strand, within DVU2666 at 2777.512 kb on - strand, within DVU2666 at 2777.531 kb on + strand, within DVU2666 at 2777.532 kb on + strand, within DVU2666 at 2777.539 kb on - strand, within DVU2666 at 2777.660 kb on + strand, within DVU2666 at 2777.676 kb on + strand, within DVU2666 at 2777.684 kb on - strand, within DVU2666 at 2777.684 kb on - strand, within DVU2666 at 2777.684 kb on - strand, within DVU2666 at 2777.685 kb on - strand, within DVU2666 at 2777.691 kb on + strand, within DVU2666 at 2777.699 kb on - strand, within DVU2666 at 2777.766 kb on + strand, within DVU2666 at 2777.780 kb on + strand, within DVU2666 at 2777.780 kb on - strand, within DVU2666 at 2777.801 kb on + strand, within DVU2666 at 2777.808 kb on + strand, within DVU2666 at 2777.808 kb on + strand, within DVU2666 at 2777.816 kb on - strand, within DVU2666 at 2777.816 kb on - strand, within DVU2666 at 2777.816 kb on - strand, within DVU2666 at 2777.881 kb on + strand, within DVU2666 at 2777.897 kb on + strand, within DVU2666 at 2777.910 kb on + strand, within DVU2666 at 2777.988 kb on - strand, within DVU2666 at 2778.013 kb on + strand at 2778.041 kb on + strand at 2778.067 kb on - strand at 2778.093 kb on + strand at 2778.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 2,775,341 + DVU2663 0.87 -1.4 2,775,354 + +4.1 2,775,361 + -0.8 2,775,362 - -0.3 2,775,406 + +0.6 2,775,444 + -0.2 2,775,452 - -0.5 2,775,468 - -1.0 2,775,476 - -1.0 2,775,495 + pstB-2 DVU2664 0.11 -1.2 2,775,505 + pstB-2 DVU2664 0.12 -0.2 2,775,546 + pstB-2 DVU2664 0.16 +1.0 2,775,554 + pstB-2 DVU2664 0.17 -0.8 2,775,602 + pstB-2 DVU2664 0.23 +2.5 2,775,627 - pstB-2 DVU2664 0.26 -0.5 2,775,684 - pstB-2 DVU2664 0.32 +4.1 2,775,703 - pstB-2 DVU2664 0.35 -0.7 2,775,705 + pstB-2 DVU2664 0.35 +0.2 2,775,705 + pstB-2 DVU2664 0.35 +0.4 2,775,705 + pstB-2 DVU2664 0.35 -2.4 2,775,705 + pstB-2 DVU2664 0.35 +2.0 2,775,713 - pstB-2 DVU2664 0.36 -0.5 2,775,713 - pstB-2 DVU2664 0.36 -1.2 2,775,713 - pstB-2 DVU2664 0.36 -1.5 2,775,730 + pstB-2 DVU2664 0.38 -1.4 2,775,730 + pstB-2 DVU2664 0.38 -1.5 2,775,738 + pstB-2 DVU2664 0.39 -0.1 2,775,823 + pstB-2 DVU2664 0.48 +2.1 2,775,826 - pstB-2 DVU2664 0.49 -1.5 2,775,833 - pstB-2 DVU2664 0.50 -1.7 2,775,900 + pstB-2 DVU2664 0.57 +2.1 2,775,908 - pstB-2 DVU2664 0.58 +1.7 2,775,926 + pstB-2 DVU2664 0.60 -1.0 2,776,009 + pstB-2 DVU2664 0.70 -0.8 2,776,021 + pstB-2 DVU2664 0.71 +1.2 2,776,107 - pstB-2 DVU2664 0.81 +0.2 2,776,176 + pstB-2 DVU2664 0.89 -1.0 2,776,185 + +0.3 2,776,264 - -0.2 2,776,283 - -1.0 2,776,292 + +0.2 2,776,320 - +0.3 2,776,339 - -0.7 2,776,413 + DVU2665 0.13 -1.1 2,776,473 + DVU2665 0.19 +1.7 2,776,507 - DVU2665 0.23 -2.8 2,776,507 - DVU2665 0.23 +1.4 2,776,582 + DVU2665 0.32 -0.8 2,776,588 - DVU2665 0.32 +0.6 2,776,588 - DVU2665 0.32 -1.1 2,776,588 - DVU2665 0.32 -1.0 2,776,698 + DVU2665 0.45 -1.4 2,776,803 - DVU2665 0.57 -2.5 2,776,832 + DVU2665 0.60 -2.0 2,776,866 - DVU2665 0.64 -0.4 2,776,929 + DVU2665 0.71 -0.6 2,776,937 - DVU2665 0.72 +1.2 2,776,992 + DVU2665 0.78 -1.5 2,777,000 - DVU2665 0.79 +0.6 2,777,010 - DVU2665 0.80 -0.3 2,777,018 - DVU2665 0.81 -0.0 2,777,019 + DVU2665 0.81 +0.0 2,777,087 + DVU2665 0.89 +1.6 2,777,123 + +1.6 2,777,169 + -1.2 2,777,459 - DVU2666 0.27 -1.1 2,777,489 + DVU2666 0.31 -0.6 2,777,512 - DVU2666 0.33 -2.0 2,777,531 + DVU2666 0.35 +1.1 2,777,532 + DVU2666 0.36 -0.2 2,777,539 - DVU2666 0.36 +2.3 2,777,660 + DVU2666 0.50 +1.7 2,777,676 + DVU2666 0.52 -0.7 2,777,684 - DVU2666 0.53 -0.4 2,777,684 - DVU2666 0.53 -0.0 2,777,684 - DVU2666 0.53 +2.7 2,777,685 - DVU2666 0.53 +1.2 2,777,691 + DVU2666 0.54 -0.4 2,777,699 - DVU2666 0.55 +0.7 2,777,766 + DVU2666 0.62 -1.1 2,777,780 + DVU2666 0.64 -0.8 2,777,780 - DVU2666 0.64 +1.5 2,777,801 + DVU2666 0.66 -0.8 2,777,808 + DVU2666 0.67 -1.7 2,777,808 + DVU2666 0.67 -0.7 2,777,816 - DVU2666 0.68 -0.7 2,777,816 - DVU2666 0.68 -0.9 2,777,816 - DVU2666 0.68 -1.3 2,777,881 + DVU2666 0.75 -0.3 2,777,897 + DVU2666 0.77 +0.8 2,777,910 + DVU2666 0.79 -0.5 2,777,988 - DVU2666 0.88 +1.9 2,778,013 + +1.5 2,778,041 + -0.8 2,778,067 - +0.2 2,778,093 + +1.0 2,778,111 - -0.0
Or see this region's nucleotide sequence