Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1636

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1633 and DVU1634 are separated by 25 nucleotidesDVU1634 and DVU1635 overlap by 14 nucleotidesDVU1635 and ppaC are separated by 43 nucleotidesppaC and DVU1638 are separated by 670 nucleotides DVU1633: DVU1633 - PTS system, IIB component (TIGR), at 1,716,328 to 1,716,789 DVU1633 DVU1634: DVU1634 - membrane protein, putative (TIGR), at 1,716,815 to 1,717,486 DVU1634 DVU1635: DVU1635 - hypothetical protein (TIGR), at 1,717,473 to 1,717,577 DVU1635 DVU1636: ppaC - inorganic pyrophosphatase, manganese-dependent (TIGR), at 1,717,621 to 1,718,541 ppaC DVU1638: DVU1638 - conserved domain protein (TIGR), at 1,719,212 to 1,719,808 DVU1638 Position (kb) 1717 1718 1719Strain fitness (log2 ratio) -1 0 1 2 3at 1716.811 kb on - strandat 1716.992 kb on - strand, within DVU1634at 1717.171 kb on + strand, within DVU1634at 1717.189 kb on - strand, within DVU1634at 1717.338 kb on + strand, within DVU1634at 1718.591 kb on + strandat 1718.666 kb on + strandat 1718.842 kb on + strandat 1718.850 kb on - strandat 1719.031 kb on + strandat 1719.058 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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1,716,811 - -0.4
1,716,992 - DVU1634 0.26 +0.2
1,717,171 + DVU1634 0.53 +1.5
1,717,189 - DVU1634 0.56 +2.4
1,717,338 + DVU1634 0.78 -0.1
1,718,591 + -1.3
1,718,666 + +3.1
1,718,842 + -1.0
1,718,850 - +0.1
1,719,031 + -0.8
1,719,058 - -0.7

Or see this region's nucleotide sequence