Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1633 and DVU1634 are separated by 25 nucleotides DVU1634 and DVU1635 overlap by 14 nucleotides DVU1635 and ppaC are separated by 43 nucleotides ppaC and DVU1638 are separated by 670 nucleotides
DVU1633: DVU1633 - PTS system, IIB component (TIGR), at 1,716,328 to 1,716,789
DVU1633
DVU1634: DVU1634 - membrane protein, putative (TIGR), at 1,716,815 to 1,717,486
DVU1634
DVU1635: DVU1635 - hypothetical protein (TIGR), at 1,717,473 to 1,717,577
DVU1635
DVU1636: ppaC - inorganic pyrophosphatase, manganese-dependent (TIGR), at 1,717,621 to 1,718,541
ppaC
DVU1638: DVU1638 - conserved domain protein (TIGR), at 1,719,212 to 1,719,808
DVU1638
Position (kb)
1717
1718
1719 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1716.811 kb on - strand at 1716.992 kb on - strand, within DVU1634 at 1717.171 kb on + strand, within DVU1634 at 1717.189 kb on - strand, within DVU1634 at 1717.338 kb on + strand, within DVU1634 at 1718.591 kb on + strand at 1718.666 kb on + strand at 1718.842 kb on + strand at 1718.850 kb on - strand at 1719.031 kb on + strand at 1719.058 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 1,716,811 - -0.4 1,716,992 - DVU1634 0.26 +0.2 1,717,171 + DVU1634 0.53 +1.5 1,717,189 - DVU1634 0.56 +2.4 1,717,338 + DVU1634 0.78 -0.1 1,718,591 + -1.3 1,718,666 + +3.1 1,718,842 + -1.0 1,718,850 - +0.1 1,719,031 + -0.8 1,719,058 - -0.7
Or see this region's nucleotide sequence