Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1617 and DVU1618 are separated by 12 nucleotides DVU1618 and gpmA overlap by 4 nucleotides gpmA and DVU1620 are separated by 4 nucleotides DVU1620 and DVU1621 are separated by 101 nucleotides DVU1621 and DORF12360 are separated by 145 nucleotides
DVU1617: DVU1617 - nitroreductase family protein (TIGR), at 1,702,244 to 1,702,837
DVU1617
DVU1618: DVU1618 - iojap-related protein (TIGR), at 1,702,850 to 1,703,254
DVU1618
DVU1619: gpmA - phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (TIGR), at 1,703,251 to 1,704,786
gpmA
DVU1620: DVU1620 - hypothetical protein (TIGR), at 1,704,791 to 1,705,033
DVU1620
DVU1621: DVU1621 - hypothetical protein (TIGR), at 1,705,135 to 1,705,557
DVU1621
DORF12360: DORF12360 - SEED: FIG00605053: hypothetical protein, at 1,705,703 to 1,706,176
DORF12360
Position (kb)
1703
1704
1705 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1702.376 kb on + strand, within DVU1617 at 1702.467 kb on + strand, within DVU1617 at 1702.578 kb on + strand, within DVU1617 at 1702.600 kb on - strand, within DVU1617 at 1702.608 kb on + strand, within DVU1617 at 1702.643 kb on + strand, within DVU1617 at 1702.660 kb on + strand, within DVU1617 at 1702.769 kb on - strand, within DVU1617 at 1704.914 kb on + strand, within DVU1620 at 1704.937 kb on + strand, within DVU1620 at 1705.077 kb on + strand at 1705.193 kb on - strand, within DVU1621 at 1705.337 kb on + strand, within DVU1621 at 1705.566 kb on + strand at 1705.592 kb on + strand at 1705.713 kb on + strand at 1705.720 kb on + strand at 1705.720 kb on + strand at 1705.745 kb on - strand at 1705.762 kb on - strand, within DORF12360
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 1,702,376 + DVU1617 0.22 -0.4 1,702,467 + DVU1617 0.38 -1.3 1,702,578 + DVU1617 0.56 -0.2 1,702,600 - DVU1617 0.60 +0.0 1,702,608 + DVU1617 0.61 -0.4 1,702,643 + DVU1617 0.67 -1.4 1,702,660 + DVU1617 0.70 -1.0 1,702,769 - DVU1617 0.88 -1.0 1,704,914 + DVU1620 0.51 -0.6 1,704,937 + DVU1620 0.60 +0.0 1,705,077 + -1.3 1,705,193 - DVU1621 0.14 +0.3 1,705,337 + DVU1621 0.48 -0.8 1,705,566 + +0.9 1,705,592 + -1.4 1,705,713 + -1.0 1,705,720 + +3.5 1,705,720 + -1.3 1,705,745 - +0.1 1,705,762 - DORF12360 0.12 -1.5
Or see this region's nucleotide sequence