Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1619

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1617 and DVU1618 are separated by 12 nucleotidesDVU1618 and gpmA overlap by 4 nucleotidesgpmA and DVU1620 are separated by 4 nucleotidesDVU1620 and DVU1621 are separated by 101 nucleotidesDVU1621 and DORF12360 are separated by 145 nucleotides DVU1617: DVU1617 - nitroreductase family protein (TIGR), at 1,702,244 to 1,702,837 DVU1617 DVU1618: DVU1618 - iojap-related protein (TIGR), at 1,702,850 to 1,703,254 DVU1618 DVU1619: gpmA - phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (TIGR), at 1,703,251 to 1,704,786 gpmA DVU1620: DVU1620 - hypothetical protein (TIGR), at 1,704,791 to 1,705,033 DVU1620 DVU1621: DVU1621 - hypothetical protein (TIGR), at 1,705,135 to 1,705,557 DVU1621 DORF12360: DORF12360 - SEED: FIG00605053: hypothetical protein, at 1,705,703 to 1,706,176 DORF12360 Position (kb) 1703 1704 1705Strain fitness (log2 ratio) -1 0 1 2 3at 1702.376 kb on + strand, within DVU1617at 1702.467 kb on + strand, within DVU1617at 1702.578 kb on + strand, within DVU1617at 1702.600 kb on - strand, within DVU1617at 1702.608 kb on + strand, within DVU1617at 1702.643 kb on + strand, within DVU1617at 1702.660 kb on + strand, within DVU1617at 1702.769 kb on - strand, within DVU1617at 1704.914 kb on + strand, within DVU1620at 1704.937 kb on + strand, within DVU1620at 1705.077 kb on + strandat 1705.193 kb on - strand, within DVU1621at 1705.337 kb on + strand, within DVU1621at 1705.566 kb on + strandat 1705.592 kb on + strandat 1705.713 kb on + strandat 1705.720 kb on + strandat 1705.720 kb on + strandat 1705.745 kb on - strandat 1705.762 kb on - strand, within DORF12360

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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1,702,376 + DVU1617 0.22 -0.4
1,702,467 + DVU1617 0.38 -1.3
1,702,578 + DVU1617 0.56 -0.2
1,702,600 - DVU1617 0.60 +0.0
1,702,608 + DVU1617 0.61 -0.4
1,702,643 + DVU1617 0.67 -1.4
1,702,660 + DVU1617 0.70 -1.0
1,702,769 - DVU1617 0.88 -1.0
1,704,914 + DVU1620 0.51 -0.6
1,704,937 + DVU1620 0.60 +0.0
1,705,077 + -1.3
1,705,193 - DVU1621 0.14 +0.3
1,705,337 + DVU1621 0.48 -0.8
1,705,566 + +0.9
1,705,592 + -1.4
1,705,713 + -1.0
1,705,720 + +3.5
1,705,720 + -1.3
1,705,745 - +0.1
1,705,762 - DORF12360 0.12 -1.5

Or see this region's nucleotide sequence