Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gdp and hup-2 are separated by 119 nucleotides hup-2 and DORF7327 are separated by 292 nucleotides DORF7327 and DVU0765 overlap by 8 nucleotides
DVU0763: gdp - GGDEF domain protein (TIGR), at 853,682 to 854,617
gdp
DVU0764: hup-2 - DNA-binding protein HU (TIGR), at 854,737 to 855,012
hup-2
DORF7327: DORF7327 - no description, at 855,305 to 855,571
DORF7327
DVU0765: DVU0765 - hydroxypyruvate reductase, putative (TIGR), at 855,564 to 856,928
DVU0765
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2 at 853.784 kb on + strand, within gdp at 853.890 kb on + strand, within gdp at 854.058 kb on - strand, within gdp at 854.060 kb on - strand, within gdp at 854.102 kb on + strand, within gdp at 854.112 kb on - strand, within gdp at 854.128 kb on + strand, within gdp at 854.156 kb on + strand, within gdp at 854.171 kb on + strand, within gdp at 854.179 kb on - strand, within gdp at 854.222 kb on - strand, within gdp at 854.230 kb on + strand, within gdp at 854.239 kb on + strand, within gdp at 854.276 kb on + strand, within gdp at 854.360 kb on + strand, within gdp at 854.360 kb on - strand, within gdp at 854.534 kb on + strand at 854.624 kb on - strand at 854.682 kb on - strand at 854.752 kb on - strand at 854.788 kb on + strand, within hup-2 at 854.801 kb on - strand, within hup-2 at 854.885 kb on + strand, within hup-2 at 854.885 kb on + strand, within hup-2 at 855.166 kb on + strand at 855.166 kb on + strand at 855.172 kb on - strand at 855.174 kb on - strand at 855.174 kb on - strand at 855.184 kb on - strand at 855.184 kb on - strand at 855.208 kb on - strand at 855.258 kb on - strand at 855.282 kb on + strand at 855.289 kb on + strand at 855.290 kb on - strand at 855.311 kb on - strand at 855.367 kb on + strand, within DORF7327 at 855.385 kb on + strand, within DORF7327 at 855.398 kb on + strand, within DORF7327 at 855.414 kb on - strand, within DORF7327 at 855.453 kb on - strand, within DORF7327 at 855.570 kb on - strand at 855.603 kb on - strand at 855.634 kb on + strand at 855.677 kb on - strand at 855.694 kb on + strand at 855.779 kb on - strand, within DVU0765 at 855.891 kb on - strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 853,784 + gdp DVU0763 0.11 -0.4 853,890 + gdp DVU0763 0.22 -0.8 854,058 - gdp DVU0763 0.40 +0.5 854,060 - gdp DVU0763 0.40 +0.1 854,102 + gdp DVU0763 0.45 -0.6 854,112 - gdp DVU0763 0.46 +2.3 854,128 + gdp DVU0763 0.48 -1.8 854,156 + gdp DVU0763 0.51 +1.7 854,171 + gdp DVU0763 0.52 -1.4 854,179 - gdp DVU0763 0.53 -1.0 854,222 - gdp DVU0763 0.58 -0.5 854,230 + gdp DVU0763 0.59 +0.5 854,239 + gdp DVU0763 0.60 -0.6 854,276 + gdp DVU0763 0.63 -1.1 854,360 + gdp DVU0763 0.72 -1.0 854,360 - gdp DVU0763 0.72 -0.5 854,534 + +1.9 854,624 - -1.5 854,682 - +1.9 854,752 - +0.7 854,788 + hup-2 DVU0764 0.18 -1.5 854,801 - hup-2 DVU0764 0.23 -1.4 854,885 + hup-2 DVU0764 0.54 -1.0 854,885 + hup-2 DVU0764 0.54 -1.9 855,166 + +1.3 855,166 + +1.9 855,172 - -2.2 855,174 - -0.1 855,174 - +2.2 855,184 - -0.6 855,184 - +2.2 855,208 - -0.7 855,258 - +0.7 855,282 + +0.9 855,289 + -1.1 855,290 - +0.7 855,311 - -0.4 855,367 + DORF7327 0.23 +1.5 855,385 + DORF7327 0.30 +1.9 855,398 + DORF7327 0.35 -0.8 855,414 - DORF7327 0.41 -0.3 855,453 - DORF7327 0.55 +1.0 855,570 - -0.6 855,603 - +1.9 855,634 + -0.9 855,677 - -2.3 855,694 + +2.1 855,779 - DVU0765 0.16 -0.6 855,891 - DVU0765 0.24 +0.5 855,908 + DVU0765 0.25 -0.9 855,908 + DVU0765 0.25 +1.1 855,908 + DVU0765 0.25 +0.3 855,908 + DVU0765 0.25 -0.3
Or see this region's nucleotide sequence