Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0753

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0752 and DVU0753 are separated by 97 nucleotidesDVU0753 and DVU0754 overlap by 4 nucleotidesDVU0754 and DVU0755 are separated by 111 nucleotides DVU0752: DVU0752 - amino acid ABC transporter, amino acid-binding protein (TIGR), at 844,606 to 845,433 DVU0752 DVU0753: DVU0753 - amino acid ABC transporter, ATP-binding protein (TIGR), at 845,531 to 846,262 DVU0753 DVU0754: DVU0754 - hypothetical protein (TIGR), at 846,259 to 846,393 DVU0754 DVU0755: DVU0755 - sensor histidine kinase, putative (TIGR), at 846,505 to 847,872 DVU0755 Position (kb) 845 846 847Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 844.557 kb on - strandat 844.584 kb on + strandat 844.584 kb on + strandat 844.584 kb on + strandat 844.592 kb on - strandat 844.592 kb on - strandat 844.592 kb on - strandat 844.592 kb on - strandat 844.599 kb on - strandat 844.599 kb on - strandat 844.897 kb on - strand, within DVU0752at 844.904 kb on + strand, within DVU0752at 844.932 kb on + strand, within DVU0752at 844.937 kb on + strand, within DVU0752at 844.945 kb on - strand, within DVU0752at 844.988 kb on + strand, within DVU0752at 845.018 kb on - strand, within DVU0752at 845.031 kb on + strand, within DVU0752at 845.036 kb on + strand, within DVU0752at 845.036 kb on + strand, within DVU0752at 845.044 kb on - strand, within DVU0752at 845.076 kb on + strand, within DVU0752at 845.189 kb on + strand, within DVU0752at 845.197 kb on - strand, within DVU0752at 845.227 kb on - strand, within DVU0752at 845.350 kb on + strand, within DVU0752at 845.358 kb on - strandat 845.397 kb on - strandat 845.411 kb on - strandat 845.421 kb on + strandat 845.455 kb on + strandat 845.542 kb on + strandat 845.609 kb on - strand, within DVU0753at 845.619 kb on + strand, within DVU0753at 845.632 kb on - strand, within DVU0753at 845.698 kb on - strand, within DVU0753at 845.768 kb on + strand, within DVU0753at 845.805 kb on - strand, within DVU0753at 845.805 kb on - strand, within DVU0753at 845.852 kb on - strand, within DVU0753at 845.902 kb on + strand, within DVU0753at 845.942 kb on - strand, within DVU0753at 845.949 kb on + strand, within DVU0753at 845.969 kb on - strand, within DVU0753at 845.980 kb on - strand, within DVU0753at 845.992 kb on + strand, within DVU0753at 845.998 kb on + strand, within DVU0753at 846.006 kb on - strand, within DVU0753at 846.030 kb on + strand, within DVU0753at 846.030 kb on + strand, within DVU0753at 846.033 kb on - strand, within DVU0753at 846.038 kb on - strand, within DVU0753at 846.060 kb on + strand, within DVU0753at 846.177 kb on - strand, within DVU0753at 846.187 kb on - strand, within DVU0753at 846.276 kb on - strand, within DVU0754at 846.488 kb on + strandat 846.511 kb on - strandat 846.627 kb on - strandat 846.632 kb on - strandat 846.780 kb on - strand, within DVU0755at 846.782 kb on - strand, within DVU0755at 846.860 kb on + strand, within DVU0755at 846.935 kb on - strand, within DVU0755at 847.211 kb on + strand, within DVU0755

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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844,557 - -0.9
844,584 + -1.3
844,584 + -0.5
844,584 + -0.8
844,592 - -0.2
844,592 - -0.4
844,592 - +1.0
844,592 - +1.4
844,599 - -1.0
844,599 - -0.9
844,897 - DVU0752 0.35 -1.1
844,904 + DVU0752 0.36 -0.7
844,932 + DVU0752 0.39 +1.8
844,937 + DVU0752 0.40 +0.8
844,945 - DVU0752 0.41 +0.6
844,988 + DVU0752 0.46 +1.6
845,018 - DVU0752 0.50 -0.3
845,031 + DVU0752 0.51 -0.7
845,036 + DVU0752 0.52 +2.1
845,036 + DVU0752 0.52 +1.8
845,044 - DVU0752 0.53 -0.9
845,076 + DVU0752 0.57 -0.8
845,189 + DVU0752 0.70 -0.6
845,197 - DVU0752 0.71 +1.2
845,227 - DVU0752 0.75 -0.4
845,350 + DVU0752 0.90 -0.3
845,358 - +1.2
845,397 - +1.7
845,411 - -1.9
845,421 + -0.8
845,455 + -2.2
845,542 + -1.0
845,609 - DVU0753 0.11 -1.0
845,619 + DVU0753 0.12 -0.8
845,632 - DVU0753 0.14 +0.2
845,698 - DVU0753 0.23 -1.3
845,768 + DVU0753 0.32 -0.8
845,805 - DVU0753 0.37 -0.9
845,805 - DVU0753 0.37 +0.7
845,852 - DVU0753 0.44 -0.4
845,902 + DVU0753 0.51 -0.1
845,942 - DVU0753 0.56 -0.1
845,949 + DVU0753 0.57 +1.5
845,969 - DVU0753 0.60 -0.1
845,980 - DVU0753 0.61 -0.4
845,992 + DVU0753 0.63 +1.0
845,998 + DVU0753 0.64 +0.9
846,006 - DVU0753 0.65 -0.9
846,030 + DVU0753 0.68 +3.0
846,030 + DVU0753 0.68 -2.8
846,033 - DVU0753 0.69 +0.3
846,038 - DVU0753 0.69 -1.4
846,060 + DVU0753 0.72 +0.7
846,177 - DVU0753 0.88 -0.5
846,187 - DVU0753 0.90 +2.5
846,276 - DVU0754 0.13 -1.5
846,488 + -1.8
846,511 - +1.9
846,627 - +1.2
846,632 - -1.4
846,780 - DVU0755 0.20 +1.0
846,782 - DVU0755 0.20 +1.3
846,860 + DVU0755 0.26 +1.0
846,935 - DVU0755 0.31 -0.6
847,211 + DVU0755 0.52 +3.5

Or see this region's nucleotide sequence