Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0111.1

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0110 and DVUA0111 overlap by 52 nucleotidesDVUA0111 and DVUA0111.1 are separated by 52 nucleotidesDVUA0111.1 and DVUA0112 are separated by 302 nucleotides DVUA0110: DVUA0110 - type III secretion system target, YopB family (TIGR), at 146,706 to 147,713 DVUA0110 DVUA0111: DVUA0111 - type III secretion system protein, IpaC family, putative (TIGR), at 147,662 to 148,558 DVUA0111 DVUA0111.1: DVUA0111.1 - SEED: Tir chaperone family protein, at 148,611 to 149,066 DVUA0111.1 DVUA0112: DVUA0112 - type III secretion system protein, YscC family (TIGR), at 149,369 to 151,243 DVUA0112 Position (kb) 148 149 150Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 147.672 kb on - strandat 147.679 kb on + strandat 147.689 kb on - strandat 147.849 kb on - strand, within DVUA0111at 147.960 kb on - strand, within DVUA0111at 147.975 kb on + strand, within DVUA0111at 148.051 kb on + strand, within DVUA0111at 148.057 kb on + strand, within DVUA0111at 148.118 kb on - strand, within DVUA0111at 148.140 kb on - strand, within DVUA0111at 148.144 kb on + strand, within DVUA0111at 148.209 kb on - strand, within DVUA0111at 148.210 kb on - strand, within DVUA0111at 148.297 kb on - strand, within DVUA0111at 148.307 kb on + strand, within DVUA0111at 148.350 kb on + strand, within DVUA0111at 148.429 kb on + strand, within DVUA0111at 148.482 kb on - strandat 148.537 kb on - strandat 148.577 kb on + strandat 148.738 kb on - strand, within DVUA0111.1at 148.918 kb on + strand, within DVUA0111.1at 148.941 kb on + strand, within DVUA0111.1at 149.001 kb on + strand, within DVUA0111.1at 149.014 kb on - strand, within DVUA0111.1at 149.328 kb on - strandat 149.389 kb on + strandat 149.413 kb on - strandat 149.432 kb on - strandat 149.444 kb on - strandat 149.484 kb on + strandat 149.546 kb on - strandat 149.679 kb on - strand, within DVUA0112at 149.687 kb on + strand, within DVUA0112at 149.808 kb on - strand, within DVUA0112at 149.830 kb on + strand, within DVUA0112at 149.830 kb on + strand, within DVUA0112at 149.908 kb on + strand, within DVUA0112at 149.908 kb on + strand, within DVUA0112at 149.909 kb on + strand, within DVUA0112at 149.924 kb on - strand, within DVUA0112at 149.926 kb on + strand, within DVUA0112

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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147,672 - +0.4
147,679 + +2.4
147,689 - -0.2
147,849 - DVUA0111 0.21 -0.7
147,960 - DVUA0111 0.33 -1.4
147,975 + DVUA0111 0.35 -1.0
148,051 + DVUA0111 0.43 +1.9
148,057 + DVUA0111 0.44 +0.4
148,118 - DVUA0111 0.51 +1.8
148,140 - DVUA0111 0.53 -0.7
148,144 + DVUA0111 0.54 +4.5
148,209 - DVUA0111 0.61 +0.6
148,210 - DVUA0111 0.61 +2.6
148,297 - DVUA0111 0.71 -0.9
148,307 + DVUA0111 0.72 -0.2
148,350 + DVUA0111 0.77 -1.1
148,429 + DVUA0111 0.86 -1.5
148,482 - -0.2
148,537 - +0.0
148,577 + -1.1
148,738 - DVUA0111.1 0.28 -1.3
148,918 + DVUA0111.1 0.67 -1.9
148,941 + DVUA0111.1 0.72 -0.6
149,001 + DVUA0111.1 0.86 -1.5
149,014 - DVUA0111.1 0.88 -0.7
149,328 - +0.2
149,389 + -0.1
149,413 - -0.9
149,432 - +0.7
149,444 - -0.8
149,484 + -1.0
149,546 - -0.4
149,679 - DVUA0112 0.17 -1.4
149,687 + DVUA0112 0.17 +1.5
149,808 - DVUA0112 0.23 -0.6
149,830 + DVUA0112 0.25 +2.4
149,830 + DVUA0112 0.25 -0.8
149,908 + DVUA0112 0.29 -1.7
149,908 + DVUA0112 0.29 +1.5
149,909 + DVUA0112 0.29 -1.1
149,924 - DVUA0112 0.30 -0.8
149,926 + DVUA0112 0.30 +0.6

Or see this region's nucleotide sequence