Experiment: MoLS4 with L-Cysteine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0110 and DVUA0111 overlap by 52 nucleotides DVUA0111 and DVUA0111.1 are separated by 52 nucleotides DVUA0111.1 and DVUA0112 are separated by 302 nucleotides
DVUA0110: DVUA0110 - type III secretion system target, YopB family (TIGR), at 146,706 to 147,713
DVUA0110
DVUA0111: DVUA0111 - type III secretion system protein, IpaC family, putative (TIGR), at 147,662 to 148,558
DVUA0111
DVUA0111.1: DVUA0111.1 - SEED: Tir chaperone family protein, at 148,611 to 149,066
DVUA0111.1
DVUA0112: DVUA0112 - type III secretion system protein, YscC family (TIGR), at 149,369 to 151,243
DVUA0112
Position (kb)
148
149
150 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 147.672 kb on - strand at 147.679 kb on + strand at 147.689 kb on - strand at 147.849 kb on - strand, within DVUA0111 at 147.960 kb on - strand, within DVUA0111 at 147.975 kb on + strand, within DVUA0111 at 148.051 kb on + strand, within DVUA0111 at 148.057 kb on + strand, within DVUA0111 at 148.118 kb on - strand, within DVUA0111 at 148.140 kb on - strand, within DVUA0111 at 148.144 kb on + strand, within DVUA0111 at 148.209 kb on - strand, within DVUA0111 at 148.210 kb on - strand, within DVUA0111 at 148.297 kb on - strand, within DVUA0111 at 148.307 kb on + strand, within DVUA0111 at 148.350 kb on + strand, within DVUA0111 at 148.429 kb on + strand, within DVUA0111 at 148.482 kb on - strand at 148.537 kb on - strand at 148.577 kb on + strand at 148.738 kb on - strand, within DVUA0111.1 at 148.918 kb on + strand, within DVUA0111.1 at 148.941 kb on + strand, within DVUA0111.1 at 149.001 kb on + strand, within DVUA0111.1 at 149.014 kb on - strand, within DVUA0111.1 at 149.328 kb on - strand at 149.389 kb on + strand at 149.413 kb on - strand at 149.432 kb on - strand at 149.444 kb on - strand at 149.484 kb on + strand at 149.546 kb on - strand at 149.679 kb on - strand, within DVUA0112 at 149.687 kb on + strand, within DVUA0112 at 149.808 kb on - strand, within DVUA0112 at 149.830 kb on + strand, within DVUA0112 at 149.830 kb on + strand, within DVUA0112 at 149.908 kb on + strand, within DVUA0112 at 149.908 kb on + strand, within DVUA0112 at 149.909 kb on + strand, within DVUA0112 at 149.924 kb on - strand, within DVUA0112 at 149.926 kb on + strand, within DVUA0112
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM remove 147,672 - +0.4 147,679 + +2.4 147,689 - -0.2 147,849 - DVUA0111 0.21 -0.7 147,960 - DVUA0111 0.33 -1.4 147,975 + DVUA0111 0.35 -1.0 148,051 + DVUA0111 0.43 +1.9 148,057 + DVUA0111 0.44 +0.4 148,118 - DVUA0111 0.51 +1.8 148,140 - DVUA0111 0.53 -0.7 148,144 + DVUA0111 0.54 +4.5 148,209 - DVUA0111 0.61 +0.6 148,210 - DVUA0111 0.61 +2.6 148,297 - DVUA0111 0.71 -0.9 148,307 + DVUA0111 0.72 -0.2 148,350 + DVUA0111 0.77 -1.1 148,429 + DVUA0111 0.86 -1.5 148,482 - -0.2 148,537 - +0.0 148,577 + -1.1 148,738 - DVUA0111.1 0.28 -1.3 148,918 + DVUA0111.1 0.67 -1.9 148,941 + DVUA0111.1 0.72 -0.6 149,001 + DVUA0111.1 0.86 -1.5 149,014 - DVUA0111.1 0.88 -0.7 149,328 - +0.2 149,389 + -0.1 149,413 - -0.9 149,432 - +0.7 149,444 - -0.8 149,484 + -1.0 149,546 - -0.4 149,679 - DVUA0112 0.17 -1.4 149,687 + DVUA0112 0.17 +1.5 149,808 - DVUA0112 0.23 -0.6 149,830 + DVUA0112 0.25 +2.4 149,830 + DVUA0112 0.25 -0.8 149,908 + DVUA0112 0.29 -1.7 149,908 + DVUA0112 0.29 +1.5 149,909 + DVUA0112 0.29 -1.1 149,924 - DVUA0112 0.30 -0.8 149,926 + DVUA0112 0.30 +0.6
Or see this region's nucleotide sequence