Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF14945

Experiment: MoLS4 with L-Cysteine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2001 and DORF14945 are separated by 621 nucleotidesDORF14945 and DVU2003 are separated by 121 nucleotides DVU2001: DVU2001 - site-specific recombinase, phage integrase family, authentic frameshift (TIGR), at 2,082,778 to 2,084,039 DVU2001 DORF14945: DORF14945 - no description, at 2,084,661 to 2,084,855 DORF14945 DVU2003: DVU2003 - transposase, IS5 family, truncation (TIGR), at 2,084,977 to 2,086,239 DVU2003 Position (kb) 2084 2085Strain fitness (log2 ratio) -2 -1 0 1 2at 2083.783 kb on - strand, within DVU2001at 2083.916 kb on + strandat 2083.916 kb on + strandat 2083.961 kb on + strandat 2084.357 kb on - strandat 2084.376 kb on + strandat 2084.545 kb on + strandat 2084.692 kb on - strand, within DORF14945at 2084.692 kb on - strand, within DORF14945at 2084.846 kb on - strandat 2085.215 kb on - strand, within DVU2003at 2085.217 kb on - strand, within DVU2003at 2085.236 kb on + strand, within DVU2003at 2085.242 kb on - strand, within DVU2003at 2085.249 kb on - strand, within DVU2003at 2085.268 kb on + strand, within DVU2003at 2085.498 kb on + strand, within DVU2003at 2085.625 kb on + strand, within DVU2003at 2085.640 kb on - strand, within DVU2003at 2085.740 kb on + strand, within DVU2003at 2085.756 kb on + strand, within DVU2003at 2085.764 kb on - strand, within DVU2003at 2085.766 kb on + strand, within DVU2003at 2085.787 kb on + strand, within DVU2003at 2085.790 kb on - strand, within DVU2003

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine as nutrient 10mM
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2,083,783 - DVU2001 0.80 -1.0
2,083,916 + -1.5
2,083,916 + +2.5
2,083,961 + +1.5
2,084,357 - +1.6
2,084,376 + -1.1
2,084,545 + -0.6
2,084,692 - DORF14945 0.16 -1.9
2,084,692 - DORF14945 0.16 -2.0
2,084,846 - -1.4
2,085,215 - DVU2003 0.19 -0.1
2,085,217 - DVU2003 0.19 -0.6
2,085,236 + DVU2003 0.21 -0.2
2,085,242 - DVU2003 0.21 +0.7
2,085,249 - DVU2003 0.22 +0.8
2,085,268 + DVU2003 0.23 -0.8
2,085,498 + DVU2003 0.41 -1.5
2,085,625 + DVU2003 0.51 +1.3
2,085,640 - DVU2003 0.52 +2.6
2,085,740 + DVU2003 0.60 -2.7
2,085,756 + DVU2003 0.62 -2.4
2,085,764 - DVU2003 0.62 +0.5
2,085,766 + DVU2003 0.62 -1.5
2,085,787 + DVU2003 0.64 -0.4
2,085,790 - DVU2003 0.64 +1.5

Or see this region's nucleotide sequence