Experiment: exometabolites; 5% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26415 and RR42_RS26420 are separated by 43 nucleotides RR42_RS26420 and RR42_RS26425 are separated by 38 nucleotides RR42_RS26425 and RR42_RS26430 are separated by 14 nucleotides
RR42_RS26415: RR42_RS26415 - MarR family transcriptional regulator, at 1,283,938 to 1,284,468
_RS26415
RR42_RS26420: RR42_RS26420 - dioxygenase, at 1,284,512 to 1,285,027
_RS26420
RR42_RS26425: RR42_RS26425 - biphenyl 2,3-dioxygenase, at 1,285,066 to 1,286,355
_RS26425
RR42_RS26430: RR42_RS26430 - ferredoxin reductase, at 1,286,370 to 1,287,656
_RS26430
Position (kb) 1285
1286
1287 Strain fitness (log2 ratio) -1
0
1 at 1284.440 kb on - strand at 1284.699 kb on + strand, within RR42_RS26420 at 1284.748 kb on - strand, within RR42_RS26420 at 1284.873 kb on + strand, within RR42_RS26420 at 1284.873 kb on + strand, within RR42_RS26420 at 1284.940 kb on - strand, within RR42_RS26420 at 1285.018 kb on + strand at 1285.097 kb on + strand at 1285.097 kb on + strand at 1285.739 kb on + strand, within RR42_RS26425 at 1285.806 kb on + strand, within RR42_RS26425 at 1285.806 kb on + strand, within RR42_RS26425 at 1285.807 kb on - strand, within RR42_RS26425 at 1285.808 kb on + strand, within RR42_RS26425 at 1285.809 kb on - strand, within RR42_RS26425 at 1285.809 kb on - strand, within RR42_RS26425 at 1285.838 kb on + strand, within RR42_RS26425 at 1286.247 kb on - strand at 1286.351 kb on + strand at 1286.352 kb on - strand at 1286.352 kb on - strand at 1286.618 kb on - strand, within RR42_RS26430 at 1286.654 kb on + strand, within RR42_RS26430 at 1287.353 kb on - strand, within RR42_RS26430
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 5% oxygen; 5 mM nitrate remove 1,284,440 - -1.4 1,284,699 + RR42_RS26420 0.36 -0.1 1,284,748 - RR42_RS26420 0.46 +0.2 1,284,873 + RR42_RS26420 0.70 +0.8 1,284,873 + RR42_RS26420 0.70 +0.5 1,284,940 - RR42_RS26420 0.83 -1.6 1,285,018 + +0.3 1,285,097 + +0.8 1,285,097 + -1.6 1,285,739 + RR42_RS26425 0.52 +0.5 1,285,806 + RR42_RS26425 0.57 +0.5 1,285,806 + RR42_RS26425 0.57 +0.1 1,285,807 - RR42_RS26425 0.57 +0.2 1,285,808 + RR42_RS26425 0.58 +0.1 1,285,809 - RR42_RS26425 0.58 +0.9 1,285,809 - RR42_RS26425 0.58 -0.2 1,285,838 + RR42_RS26425 0.60 -0.4 1,286,247 - -0.6 1,286,351 + -0.4 1,286,352 - -0.3 1,286,352 - -1.2 1,286,618 - RR42_RS26430 0.19 +0.4 1,286,654 + RR42_RS26430 0.22 +0.3 1,287,353 - RR42_RS26430 0.76 +0.3
Or see this region's nucleotide sequence