Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19290

Experiment: exometabolites; 5% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19280 and RR42_RS19285 are separated by 101 nucleotidesRR42_RS19285 and RR42_RS19290 are separated by 94 nucleotidesRR42_RS19290 and RR42_RS19295 are separated by 77 nucleotides RR42_RS19280: RR42_RS19280 - transcriptional regulator, at 4,162,583 to 4,163,596 _RS19280 RR42_RS19285: RR42_RS19285 - 30S ribosomal protein S10, at 4,163,698 to 4,164,006 _RS19285 RR42_RS19290: RR42_RS19290 - elongation factor Tu, at 4,164,101 to 4,165,291 _RS19290 RR42_RS19295: RR42_RS19295 - elongation factor G, at 4,165,369 to 4,167,471 _RS19295 Position (kb) 4164 4165 4166Strain fitness (log2 ratio) -2 -1 0 1at 4163.103 kb on - strand, within RR42_RS19280at 4163.103 kb on - strand, within RR42_RS19280at 4163.103 kb on - strand, within RR42_RS19280at 4163.117 kb on + strand, within RR42_RS19280at 4163.117 kb on + strand, within RR42_RS19280at 4163.118 kb on - strand, within RR42_RS19280at 4163.118 kb on - strand, within RR42_RS19280at 4163.118 kb on - strand, within RR42_RS19280at 4163.193 kb on + strand, within RR42_RS19280at 4163.294 kb on + strand, within RR42_RS19280at 4163.294 kb on + strand, within RR42_RS19280at 4163.295 kb on - strand, within RR42_RS19280at 4163.295 kb on - strand, within RR42_RS19280at 4163.295 kb on - strand, within RR42_RS19280at 4163.295 kb on - strand, within RR42_RS19280at 4163.295 kb on - strand, within RR42_RS19280at 4163.295 kb on - strand, within RR42_RS19280at 4163.372 kb on + strand, within RR42_RS19280at 4163.372 kb on + strand, within RR42_RS19280at 4163.372 kb on + strand, within RR42_RS19280at 4163.373 kb on - strand, within RR42_RS19280at 4163.414 kb on + strand, within RR42_RS19280at 4163.414 kb on + strand, within RR42_RS19280at 4163.415 kb on - strand, within RR42_RS19280at 4163.415 kb on - strand, within RR42_RS19280at 4163.528 kb on - strandat 4163.528 kb on - strandat 4163.528 kb on - strandat 4163.537 kb on + strandat 4163.594 kb on + strandat 4163.594 kb on + strandat 4163.699 kb on + strandat 4165.367 kb on - strandat 4165.371 kb on - strandat 4165.371 kb on - strandat 4165.371 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 5% oxygen; 5 mM nitrate
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4,163,103 - RR42_RS19280 0.51 -1.2
4,163,103 - RR42_RS19280 0.51 +0.2
4,163,103 - RR42_RS19280 0.51 +0.0
4,163,117 + RR42_RS19280 0.53 +0.6
4,163,117 + RR42_RS19280 0.53 +0.2
4,163,118 - RR42_RS19280 0.53 -0.0
4,163,118 - RR42_RS19280 0.53 +0.2
4,163,118 - RR42_RS19280 0.53 +0.2
4,163,193 + RR42_RS19280 0.60 +0.6
4,163,294 + RR42_RS19280 0.70 +0.1
4,163,294 + RR42_RS19280 0.70 -0.2
4,163,295 - RR42_RS19280 0.70 -1.9
4,163,295 - RR42_RS19280 0.70 +1.2
4,163,295 - RR42_RS19280 0.70 -0.2
4,163,295 - RR42_RS19280 0.70 +0.3
4,163,295 - RR42_RS19280 0.70 -0.5
4,163,295 - RR42_RS19280 0.70 -0.2
4,163,372 + RR42_RS19280 0.78 -0.3
4,163,372 + RR42_RS19280 0.78 +0.2
4,163,372 + RR42_RS19280 0.78 -1.3
4,163,373 - RR42_RS19280 0.78 -1.2
4,163,414 + RR42_RS19280 0.82 +0.1
4,163,414 + RR42_RS19280 0.82 -0.5
4,163,415 - RR42_RS19280 0.82 -0.9
4,163,415 - RR42_RS19280 0.82 +0.2
4,163,528 - -1.1
4,163,528 - +0.5
4,163,528 - -0.8
4,163,537 + -0.3
4,163,594 + -1.4
4,163,594 + -0.3
4,163,699 + -1.3
4,165,367 - +0.0
4,165,371 - -0.2
4,165,371 - -0.6
4,165,371 - -2.5

Or see this region's nucleotide sequence