Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05920

Experiment: exometabolites; 5% oxygen; 5 mM nitrate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05915 and RR42_RS05920 are separated by 114 nucleotidesRR42_RS05920 and RR42_RS05925 are separated by 117 nucleotides RR42_RS05915: RR42_RS05915 - inorganic polyphosphate kinase, at 1,303,935 to 1,304,852 _RS05915 RR42_RS05920: RR42_RS05920 - HrcA family transcriptional regulator, at 1,304,967 to 1,306,004 _RS05920 RR42_RS05925: RR42_RS05925 - ferrochelatase, at 1,306,122 to 1,307,237 _RS05925 Position (kb) 1304 1305 1306 1307Strain fitness (log2 ratio) -2 -1 0 1at 1304.862 kb on - strandat 1305.012 kb on + strandat 1305.013 kb on - strandat 1305.058 kb on - strandat 1305.426 kb on - strand, within RR42_RS05920at 1305.480 kb on + strand, within RR42_RS05920at 1305.596 kb on + strand, within RR42_RS05920at 1305.596 kb on + strand, within RR42_RS05920at 1305.596 kb on + strand, within RR42_RS05920at 1305.596 kb on + strand, within RR42_RS05920at 1305.597 kb on - strand, within RR42_RS05920at 1305.876 kb on + strand, within RR42_RS05920at 1306.002 kb on + strandat 1306.002 kb on + strandat 1306.002 kb on + strandat 1306.003 kb on - strandat 1306.003 kb on - strandat 1306.003 kb on - strandat 1306.003 kb on - strandat 1306.003 kb on - strandat 1306.146 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction exometabolites; 5% oxygen; 5 mM nitrate
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1,304,862 - +0.5
1,305,012 + -0.0
1,305,013 - +0.1
1,305,058 - +0.5
1,305,426 - RR42_RS05920 0.44 +1.7
1,305,480 + RR42_RS05920 0.49 -1.3
1,305,596 + RR42_RS05920 0.61 -0.0
1,305,596 + RR42_RS05920 0.61 -0.1
1,305,596 + RR42_RS05920 0.61 -0.8
1,305,596 + RR42_RS05920 0.61 -2.2
1,305,597 - RR42_RS05920 0.61 -0.6
1,305,876 + RR42_RS05920 0.88 -0.3
1,306,002 + -0.1
1,306,002 + +0.4
1,306,002 + -0.1
1,306,003 - -0.1
1,306,003 - +0.0
1,306,003 - -0.9
1,306,003 - -2.0
1,306,003 - +0.9
1,306,146 + -0.4

Or see this region's nucleotide sequence