Experiment: exometabolites; 5% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02210 and RR42_RS02215 overlap by 4 nucleotides RR42_RS02215 and RR42_RS02220 are separated by 202 nucleotides RR42_RS02220 and RR42_RS02225 are separated by 27 nucleotides
RR42_RS02210: RR42_RS02210 - succinate dehydrogenase, at 490,546 to 490,899
_RS02210
RR42_RS02215: RR42_RS02215 - fumarate reductase, at 490,896 to 491,609
_RS02215
RR42_RS02220: RR42_RS02220 - LysR family transcriptional regulator, at 491,812 to 492,753
_RS02220
RR42_RS02225: RR42_RS02225 - ABC transporter substrate-binding protein, at 492,781 to 493,764
_RS02225
Position (kb) 491
492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 490.856 kb on + strand, within RR42_RS02210 at 490.857 kb on - strand, within RR42_RS02210 at 490.900 kb on - strand at 490.900 kb on - strand at 490.900 kb on - strand at 491.003 kb on + strand, within RR42_RS02215 at 491.004 kb on - strand, within RR42_RS02215 at 491.503 kb on + strand, within RR42_RS02215 at 491.504 kb on - strand, within RR42_RS02215 at 491.551 kb on + strand at 491.587 kb on - strand at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.290 kb on + strand, within RR42_RS02220 at 492.291 kb on - strand, within RR42_RS02220 at 492.291 kb on - strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.292 kb on + strand, within RR42_RS02220 at 492.293 kb on - strand, within RR42_RS02220 at 492.293 kb on - strand, within RR42_RS02220 at 492.293 kb on - strand, within RR42_RS02220 at 492.651 kb on + strand, within RR42_RS02220 at 492.652 kb on - strand, within RR42_RS02220 at 492.652 kb on - strand, within RR42_RS02220 at 492.670 kb on + strand at 492.845 kb on + strand at 493.416 kb on + strand, within RR42_RS02225 at 493.524 kb on + strand, within RR42_RS02225 at 493.525 kb on - strand, within RR42_RS02225 at 493.646 kb on + strand, within RR42_RS02225 at 493.646 kb on + strand, within RR42_RS02225 at 493.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 5% oxygen; 5 mM nitrate remove 490,856 + RR42_RS02210 0.88 -0.6 490,857 - RR42_RS02210 0.88 -0.2 490,900 - +1.3 490,900 - -0.4 490,900 - -0.6 491,003 + RR42_RS02215 0.15 +0.9 491,004 - RR42_RS02215 0.15 +0.0 491,503 + RR42_RS02215 0.85 +0.1 491,504 - RR42_RS02215 0.85 -0.6 491,551 + -0.0 491,587 - -0.7 492,290 + RR42_RS02220 0.51 -0.1 492,290 + RR42_RS02220 0.51 -1.4 492,290 + RR42_RS02220 0.51 -1.3 492,290 + RR42_RS02220 0.51 +0.2 492,290 + RR42_RS02220 0.51 +0.4 492,291 - RR42_RS02220 0.51 +0.9 492,291 - RR42_RS02220 0.51 -0.0 492,292 + RR42_RS02220 0.51 -1.2 492,292 + RR42_RS02220 0.51 +0.0 492,292 + RR42_RS02220 0.51 -0.0 492,292 + RR42_RS02220 0.51 -0.6 492,293 - RR42_RS02220 0.51 -0.5 492,293 - RR42_RS02220 0.51 -0.1 492,293 - RR42_RS02220 0.51 +0.6 492,651 + RR42_RS02220 0.89 +0.0 492,652 - RR42_RS02220 0.89 -0.0 492,652 - RR42_RS02220 0.89 -0.2 492,670 + -0.9 492,845 + -0.1 493,416 + RR42_RS02225 0.65 -2.0 493,524 + RR42_RS02225 0.76 -0.0 493,525 - RR42_RS02225 0.76 +1.8 493,646 + RR42_RS02225 0.88 -2.8 493,646 + RR42_RS02225 0.88 +0.4 493,739 - +0.8
Or see this region's nucleotide sequence