Experiment: exometabolites; 5% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01465 and RR42_RS01470 are separated by 56 nucleotides RR42_RS01470 and RR42_RS01475 are separated by 224 nucleotides RR42_RS01475 and RR42_RS01480 are separated by 1 nucleotides
RR42_RS01465: RR42_RS01465 - histidine kinase, at 331,119 to 333,086
_RS01465
RR42_RS01470: RR42_RS01470 - hypothetical protein, at 333,143 to 333,856
_RS01470
RR42_RS01475: RR42_RS01475 - hypothetical protein, at 334,081 to 334,401
_RS01475
RR42_RS01480: RR42_RS01480 - hypothetical protein, at 334,403 to 335,668
_RS01480
Position (kb) 333
334 Strain fitness (log2 ratio) -2
-1
0
1
2 at 332.181 kb on + strand, within RR42_RS01465 at 332.181 kb on + strand, within RR42_RS01465 at 332.181 kb on + strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.182 kb on - strand, within RR42_RS01465 at 332.475 kb on + strand, within RR42_RS01465 at 332.475 kb on + strand, within RR42_RS01465 at 332.476 kb on - strand, within RR42_RS01465 at 332.477 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.796 kb on + strand, within RR42_RS01465 at 332.797 kb on - strand, within RR42_RS01465 at 332.797 kb on - strand, within RR42_RS01465 at 332.797 kb on - strand, within RR42_RS01465 at 332.803 kb on - strand, within RR42_RS01465 at 333.227 kb on + strand, within RR42_RS01470 at 333.228 kb on - strand, within RR42_RS01470 at 333.300 kb on + strand, within RR42_RS01470 at 333.301 kb on - strand, within RR42_RS01470 at 333.446 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.630 kb on + strand, within RR42_RS01470 at 333.631 kb on - strand, within RR42_RS01470 at 333.631 kb on - strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.704 kb on + strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.705 kb on - strand, within RR42_RS01470 at 333.815 kb on + strand at 333.816 kb on - strand at 333.928 kb on - strand at 333.958 kb on + strand at 333.959 kb on - strand at 334.066 kb on + strand at 334.066 kb on + strand at 334.066 kb on + strand at 334.097 kb on + strand at 334.098 kb on - strand at 334.098 kb on - strand at 334.098 kb on - strand at 334.253 kb on + strand, within RR42_RS01475 at 334.253 kb on - strand, within RR42_RS01475 at 334.254 kb on - strand, within RR42_RS01475 at 334.254 kb on - strand, within RR42_RS01475 at 334.258 kb on + strand, within RR42_RS01475 at 334.259 kb on - strand, within RR42_RS01475 at 334.259 kb on - strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.291 kb on + strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.292 kb on - strand, within RR42_RS01475 at 334.450 kb on - strand at 334.674 kb on + strand, within RR42_RS01480
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 5% oxygen; 5 mM nitrate remove 332,181 + RR42_RS01465 0.54 -2.0 332,181 + RR42_RS01465 0.54 +0.1 332,181 + RR42_RS01465 0.54 +1.0 332,182 - RR42_RS01465 0.54 -0.0 332,182 - RR42_RS01465 0.54 +1.2 332,182 - RR42_RS01465 0.54 +0.2 332,182 - RR42_RS01465 0.54 +0.1 332,182 - RR42_RS01465 0.54 +0.8 332,182 - RR42_RS01465 0.54 -0.4 332,475 + RR42_RS01465 0.69 +0.3 332,475 + RR42_RS01465 0.69 -0.8 332,476 - RR42_RS01465 0.69 -0.2 332,477 + RR42_RS01465 0.69 +1.2 332,796 + RR42_RS01465 0.85 -2.2 332,796 + RR42_RS01465 0.85 -0.4 332,796 + RR42_RS01465 0.85 -0.3 332,796 + RR42_RS01465 0.85 -1.5 332,797 - RR42_RS01465 0.85 +0.6 332,797 - RR42_RS01465 0.85 +0.3 332,797 - RR42_RS01465 0.85 -1.2 332,803 - RR42_RS01465 0.86 -0.1 333,227 + RR42_RS01470 0.12 +2.1 333,228 - RR42_RS01470 0.12 +0.2 333,300 + RR42_RS01470 0.22 +0.0 333,301 - RR42_RS01470 0.22 -1.5 333,446 + RR42_RS01470 0.42 +1.5 333,630 + RR42_RS01470 0.68 -1.2 333,630 + RR42_RS01470 0.68 +1.8 333,630 + RR42_RS01470 0.68 +0.9 333,631 - RR42_RS01470 0.68 +1.8 333,631 - RR42_RS01470 0.68 -0.5 333,704 + RR42_RS01470 0.79 -0.8 333,704 + RR42_RS01470 0.79 +0.1 333,704 + RR42_RS01470 0.79 +0.1 333,704 + RR42_RS01470 0.79 -2.1 333,704 + RR42_RS01470 0.79 +1.0 333,705 - RR42_RS01470 0.79 +0.6 333,705 - RR42_RS01470 0.79 +0.8 333,705 - RR42_RS01470 0.79 +0.2 333,815 + -0.4 333,816 - +0.8 333,928 - -0.2 333,958 + -1.2 333,959 - -0.1 334,066 + -0.6 334,066 + +0.7 334,066 + +1.8 334,097 + -0.9 334,098 - -0.4 334,098 - -0.5 334,098 - -0.1 334,253 + RR42_RS01475 0.54 +0.4 334,253 - RR42_RS01475 0.54 +1.9 334,254 - RR42_RS01475 0.54 +1.0 334,254 - RR42_RS01475 0.54 -0.6 334,258 + RR42_RS01475 0.55 -0.4 334,259 - RR42_RS01475 0.55 -0.6 334,259 - RR42_RS01475 0.55 +0.2 334,291 + RR42_RS01475 0.65 +0.6 334,291 + RR42_RS01475 0.65 +0.9 334,291 + RR42_RS01475 0.65 -0.0 334,291 + RR42_RS01475 0.65 +1.2 334,291 + RR42_RS01475 0.65 -0.9 334,291 + RR42_RS01475 0.65 +1.2 334,292 - RR42_RS01475 0.66 -0.6 334,292 - RR42_RS01475 0.66 +0.1 334,292 - RR42_RS01475 0.66 +0.4 334,292 - RR42_RS01475 0.66 -0.5 334,292 - RR42_RS01475 0.66 +0.0 334,450 - +0.2 334,674 + RR42_RS01480 0.21 -0.6
Or see this region's nucleotide sequence