Experiment: exometabolites; 5% oxygen; 5 mM nitrate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00425 and RR42_RS00430 are separated by 17 nucleotides RR42_RS00430 and RR42_RS00435 are separated by 232 nucleotides
RR42_RS00425: RR42_RS00425 - ABC transporter substrate-binding protein, at 112,011 to 113,024
_RS00425
RR42_RS00430: RR42_RS00430 - histidine kinase, at 113,042 to 113,734
_RS00430
RR42_RS00435: RR42_RS00435 - transcriptional regulator, at 113,967 to 114,665
_RS00435
Position (kb) 113
114 Strain fitness (log2 ratio) -2
-1
0
1
2 at 112.129 kb on - strand, within RR42_RS00425 at 112.374 kb on + strand, within RR42_RS00425 at 112.375 kb on - strand, within RR42_RS00425 at 112.375 kb on - strand, within RR42_RS00425 at 112.375 kb on - strand, within RR42_RS00425 at 112.375 kb on - strand, within RR42_RS00425 at 112.599 kb on + strand, within RR42_RS00425 at 113.082 kb on + strand at 113.082 kb on + strand at 113.082 kb on + strand at 113.082 kb on + strand at 113.082 kb on + strand at 113.083 kb on - strand at 113.083 kb on - strand at 113.083 kb on - strand at 113.332 kb on - strand, within RR42_RS00430 at 113.601 kb on + strand, within RR42_RS00430 at 113.602 kb on - strand, within RR42_RS00430 at 113.773 kb on - strand at 113.862 kb on + strand at 113.863 kb on - strand at 113.863 kb on - strand at 113.917 kb on + strand at 113.966 kb on + strand at 113.966 kb on + strand at 113.966 kb on + strand at 114.050 kb on + strand, within RR42_RS00435 at 114.051 kb on - strand, within RR42_RS00435 at 114.261 kb on + strand, within RR42_RS00435 at 114.261 kb on + strand, within RR42_RS00435 at 114.261 kb on + strand, within RR42_RS00435 at 114.262 kb on - strand, within RR42_RS00435 at 114.262 kb on - strand, within RR42_RS00435 at 114.372 kb on + strand, within RR42_RS00435 at 114.372 kb on + strand, within RR42_RS00435 at 114.372 kb on + strand, within RR42_RS00435 at 114.372 kb on + strand, within RR42_RS00435 at 114.552 kb on - strand, within RR42_RS00435 at 114.557 kb on + strand, within RR42_RS00435 at 114.557 kb on + strand, within RR42_RS00435 at 114.557 kb on + strand, within RR42_RS00435 at 114.557 kb on + strand, within RR42_RS00435 at 114.557 kb on + strand, within RR42_RS00435 at 114.557 kb on + strand, within RR42_RS00435 at 114.557 kb on + strand, within RR42_RS00435 at 114.557 kb on + strand, within RR42_RS00435 at 114.557 kb on + strand, within RR42_RS00435 at 114.558 kb on - strand, within RR42_RS00435 at 114.558 kb on - strand, within RR42_RS00435 at 114.558 kb on - strand, within RR42_RS00435 at 114.558 kb on - strand, within RR42_RS00435 at 114.558 kb on - strand, within RR42_RS00435 at 114.558 kb on - strand, within RR42_RS00435 at 114.558 kb on - strand, within RR42_RS00435 at 114.558 kb on - strand, within RR42_RS00435 at 114.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction exometabolites; 5% oxygen; 5 mM nitrate remove 112,129 - RR42_RS00425 0.12 +0.8 112,374 + RR42_RS00425 0.36 +0.2 112,375 - RR42_RS00425 0.36 -0.7 112,375 - RR42_RS00425 0.36 +1.1 112,375 - RR42_RS00425 0.36 -0.4 112,375 - RR42_RS00425 0.36 -0.6 112,599 + RR42_RS00425 0.58 -1.0 113,082 + +0.4 113,082 + +0.4 113,082 + +0.3 113,082 + +1.8 113,082 + -0.0 113,083 - -1.8 113,083 - +1.1 113,083 - +0.7 113,332 - RR42_RS00430 0.42 -2.4 113,601 + RR42_RS00430 0.81 -0.6 113,602 - RR42_RS00430 0.81 -0.4 113,773 - -1.7 113,862 + +1.1 113,863 - +0.4 113,863 - -1.4 113,917 + +0.4 113,966 + +1.1 113,966 + +0.8 113,966 + -1.1 114,050 + RR42_RS00435 0.12 -0.4 114,051 - RR42_RS00435 0.12 +1.2 114,261 + RR42_RS00435 0.42 +0.4 114,261 + RR42_RS00435 0.42 +0.1 114,261 + RR42_RS00435 0.42 -0.2 114,262 - RR42_RS00435 0.42 +1.5 114,262 - RR42_RS00435 0.42 +0.3 114,372 + RR42_RS00435 0.58 +0.6 114,372 + RR42_RS00435 0.58 +0.7 114,372 + RR42_RS00435 0.58 -0.5 114,372 + RR42_RS00435 0.58 +1.2 114,552 - RR42_RS00435 0.84 -0.9 114,557 + RR42_RS00435 0.84 -0.9 114,557 + RR42_RS00435 0.84 +0.2 114,557 + RR42_RS00435 0.84 +1.2 114,557 + RR42_RS00435 0.84 +2.1 114,557 + RR42_RS00435 0.84 +1.0 114,557 + RR42_RS00435 0.84 +0.3 114,557 + RR42_RS00435 0.84 -1.2 114,557 + RR42_RS00435 0.84 -0.0 114,557 + RR42_RS00435 0.84 +0.6 114,558 - RR42_RS00435 0.85 -0.5 114,558 - RR42_RS00435 0.85 -1.2 114,558 - RR42_RS00435 0.85 -0.8 114,558 - RR42_RS00435 0.85 +0.4 114,558 - RR42_RS00435 0.85 -0.0 114,558 - RR42_RS00435 0.85 -0.6 114,558 - RR42_RS00435 0.85 +1.1 114,558 - RR42_RS00435 0.85 +0.1 114,621 + +0.2
Or see this region's nucleotide sequence