Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09550 and PGA1_c09560 are separated by 124 nucleotides PGA1_c09560 and PGA1_c09570 are separated by 3 nucleotides PGA1_c09570 and PGA1_c09580 are separated by 4 nucleotides PGA1_c09580 and PGA1_c09590 are separated by 79 nucleotides
PGA1_c09550: PGA1_c09550 - Glutaminase (EC 3.5.1.2) <small>(from data)</small>, at 979,991 to 980,905
_c09550
PGA1_c09560: PGA1_c09560 - UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD, at 981,030 to 982,427
_c09560
PGA1_c09570: PGA1_c09570 - putative HTH-type transcriptional regulator, MarR family, at 982,431 to 982,874
_c09570
PGA1_c09580: PGA1_c09580 - antibiotic biosynthesis monooxygenase-like protein, at 982,879 to 983,172
_c09580
PGA1_c09590: PGA1_c09590 - uncharacterized protein YhiN, at 983,252 to 984,433
_c09590
Position (kb) 981
982
983 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 980.066 kb on + strand at 980.074 kb on - strand at 980.113 kb on + strand, within PGA1_c09550 at 980.206 kb on - strand, within PGA1_c09550 at 980.238 kb on - strand, within PGA1_c09550 at 980.291 kb on - strand, within PGA1_c09550 at 980.358 kb on + strand, within PGA1_c09550 at 980.358 kb on + strand, within PGA1_c09550 at 980.400 kb on + strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.408 kb on - strand, within PGA1_c09550 at 980.487 kb on - strand, within PGA1_c09550 at 980.515 kb on + strand, within PGA1_c09550 at 980.515 kb on + strand, within PGA1_c09550 at 980.520 kb on + strand, within PGA1_c09550 at 980.536 kb on + strand, within PGA1_c09550 at 980.544 kb on + strand, within PGA1_c09550 at 980.556 kb on - strand, within PGA1_c09550 at 980.623 kb on - strand, within PGA1_c09550 at 980.635 kb on - strand, within PGA1_c09550 at 980.675 kb on + strand, within PGA1_c09550 at 980.675 kb on + strand, within PGA1_c09550 at 980.675 kb on + strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.683 kb on - strand, within PGA1_c09550 at 980.701 kb on - strand, within PGA1_c09550 at 980.701 kb on - strand, within PGA1_c09550 at 980.719 kb on - strand, within PGA1_c09550 at 980.745 kb on + strand, within PGA1_c09550 at 980.745 kb on + strand, within PGA1_c09550 at 980.745 kb on + strand, within PGA1_c09550 at 980.753 kb on - strand, within PGA1_c09550 at 980.796 kb on + strand, within PGA1_c09550 at 980.802 kb on + strand, within PGA1_c09550 at 980.810 kb on - strand, within PGA1_c09550 at 980.847 kb on + strand at 980.850 kb on - strand at 980.855 kb on - strand at 980.938 kb on - strand at 981.020 kb on + strand at 982.421 kb on + strand at 982.423 kb on + strand at 982.423 kb on + strand at 982.531 kb on - strand, within PGA1_c09570 at 982.564 kb on + strand, within PGA1_c09570 at 982.590 kb on + strand, within PGA1_c09570 at 982.590 kb on + strand, within PGA1_c09570 at 982.594 kb on - strand, within PGA1_c09570 at 982.598 kb on - strand, within PGA1_c09570 at 982.608 kb on - strand, within PGA1_c09570 at 982.726 kb on - strand, within PGA1_c09570 at 982.727 kb on - strand, within PGA1_c09570 at 982.820 kb on + strand, within PGA1_c09570 at 982.828 kb on - strand, within PGA1_c09570 at 982.830 kb on + strand at 982.830 kb on + strand at 982.849 kb on - strand at 982.882 kb on + strand at 982.885 kb on - strand at 982.885 kb on - strand at 982.890 kb on - strand at 982.913 kb on + strand, within PGA1_c09580 at 982.913 kb on + strand, within PGA1_c09580 at 982.921 kb on - strand, within PGA1_c09580 at 983.013 kb on + strand, within PGA1_c09580 at 983.085 kb on - strand, within PGA1_c09580 at 983.132 kb on - strand, within PGA1_c09580 at 983.138 kb on - strand, within PGA1_c09580 at 983.250 kb on + strand at 983.250 kb on + strand at 983.258 kb on - strand at 983.284 kb on - strand at 983.297 kb on - strand at 983.297 kb on - strand at 983.330 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 980,066 + -3.0 980,074 - +2.4 980,113 + PGA1_c09550 0.13 -2.2 980,206 - PGA1_c09550 0.23 -0.5 980,238 - PGA1_c09550 0.27 -0.4 980,291 - PGA1_c09550 0.33 +0.8 980,358 + PGA1_c09550 0.40 -0.3 980,358 + PGA1_c09550 0.40 +0.6 980,400 + PGA1_c09550 0.45 +1.0 980,408 - PGA1_c09550 0.46 +0.2 980,408 - PGA1_c09550 0.46 -1.5 980,408 - PGA1_c09550 0.46 +0.1 980,408 - PGA1_c09550 0.46 -0.5 980,487 - PGA1_c09550 0.54 +1.3 980,515 + PGA1_c09550 0.57 +1.1 980,515 + PGA1_c09550 0.57 -0.4 980,520 + PGA1_c09550 0.58 -0.6 980,536 + PGA1_c09550 0.60 -1.6 980,544 + PGA1_c09550 0.60 -0.6 980,556 - PGA1_c09550 0.62 -1.0 980,623 - PGA1_c09550 0.69 +0.1 980,635 - PGA1_c09550 0.70 -0.6 980,675 + PGA1_c09550 0.75 +1.3 980,675 + PGA1_c09550 0.75 -0.9 980,675 + PGA1_c09550 0.75 +0.5 980,683 - PGA1_c09550 0.76 -0.9 980,683 - PGA1_c09550 0.76 -0.7 980,683 - PGA1_c09550 0.76 -1.5 980,683 - PGA1_c09550 0.76 +1.3 980,701 - PGA1_c09550 0.78 -0.3 980,701 - PGA1_c09550 0.78 -0.1 980,719 - PGA1_c09550 0.80 +1.1 980,745 + PGA1_c09550 0.82 -2.2 980,745 + PGA1_c09550 0.82 +1.6 980,745 + PGA1_c09550 0.82 -1.8 980,753 - PGA1_c09550 0.83 -0.4 980,796 + PGA1_c09550 0.88 -0.6 980,802 + PGA1_c09550 0.89 +0.9 980,810 - PGA1_c09550 0.90 -0.3 980,847 + +1.5 980,850 - +0.4 980,855 - -2.6 980,938 - +1.7 981,020 + -1.6 982,421 + +0.5 982,423 + -1.7 982,423 + +1.3 982,531 - PGA1_c09570 0.23 -3.1 982,564 + PGA1_c09570 0.30 +0.4 982,590 + PGA1_c09570 0.36 -1.0 982,590 + PGA1_c09570 0.36 +0.7 982,594 - PGA1_c09570 0.37 -1.0 982,598 - PGA1_c09570 0.38 -1.3 982,608 - PGA1_c09570 0.40 +0.4 982,726 - PGA1_c09570 0.66 -0.2 982,727 - PGA1_c09570 0.67 +0.3 982,820 + PGA1_c09570 0.88 +0.7 982,828 - PGA1_c09570 0.89 +0.1 982,830 + +0.6 982,830 + +1.6 982,849 - -0.0 982,882 + -1.8 982,885 - +0.2 982,885 - -2.0 982,890 - +0.8 982,913 + PGA1_c09580 0.12 -0.2 982,913 + PGA1_c09580 0.12 -0.8 982,921 - PGA1_c09580 0.14 +2.2 983,013 + PGA1_c09580 0.46 -2.4 983,085 - PGA1_c09580 0.70 -0.1 983,132 - PGA1_c09580 0.86 +0.9 983,138 - PGA1_c09580 0.88 -0.6 983,250 + +0.3 983,250 + +0.1 983,258 - +1.9 983,284 - -0.4 983,297 - -0.4 983,297 - -0.1 983,330 + +1.4
Or see this region's nucleotide sequence