Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08500 and PGA1_c08510 are separated by 13 nucleotides PGA1_c08510 and PGA1_c08520 overlap by 8 nucleotides PGA1_c08520 and PGA1_c08530 overlap by 4 nucleotides PGA1_c08530 and PGA1_c08540 are separated by 259 nucleotides
PGA1_c08500: PGA1_c08500 - hypothetical protein, at 878,152 to 878,655
_c08500
PGA1_c08510: PGA1_c08510 - RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup), at 878,669 to 879,328
_c08510
PGA1_c08520: PGA1_c08520 - hypothetical protein, at 879,321 to 879,797
_c08520
PGA1_c08530: PGA1_c08530 - Predicted integral membrane protein, at 879,794 to 880,273
_c08530
PGA1_c08540: PGA1_c08540 - response regulator PleD, at 880,533 to 881,963
_c08540
Position (kb) 879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 878.329 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.401 kb on + strand, within PGA1_c08500 at 878.404 kb on - strand, within PGA1_c08500 at 878.409 kb on - strand, within PGA1_c08500 at 878.474 kb on + strand, within PGA1_c08500 at 878.512 kb on + strand, within PGA1_c08500 at 878.520 kb on - strand, within PGA1_c08500 at 878.553 kb on - strand, within PGA1_c08500 at 878.606 kb on + strand at 878.621 kb on + strand at 878.719 kb on - strand at 878.736 kb on - strand, within PGA1_c08510 at 878.759 kb on + strand, within PGA1_c08510 at 879.305 kb on + strand at 879.560 kb on + strand, within PGA1_c08520 at 880.473 kb on - strand at 880.632 kb on + strand at 880.678 kb on + strand, within PGA1_c08540 at 880.678 kb on + strand, within PGA1_c08540
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 878,329 + PGA1_c08500 0.35 -0.5 878,401 + PGA1_c08500 0.49 -0.8 878,401 + PGA1_c08500 0.49 +1.6 878,404 - PGA1_c08500 0.50 -1.3 878,409 - PGA1_c08500 0.51 -1.7 878,474 + PGA1_c08500 0.64 +0.9 878,512 + PGA1_c08500 0.71 +1.4 878,520 - PGA1_c08500 0.73 -0.4 878,553 - PGA1_c08500 0.80 +0.0 878,606 + -1.2 878,621 + -1.5 878,719 - -0.8 878,736 - PGA1_c08510 0.10 -0.1 878,759 + PGA1_c08510 0.14 -0.5 879,305 + -0.2 879,560 + PGA1_c08520 0.50 -0.7 880,473 - -1.3 880,632 + -3.0 880,678 + PGA1_c08540 0.10 -0.9 880,678 + PGA1_c08540 0.10 -0.9
Or see this region's nucleotide sequence