Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08390 and PGA1_c08400 are separated by 132 nucleotides PGA1_c08400 and PGA1_c08410 are separated by 93 nucleotides PGA1_c08410 and PGA1_c08420 are separated by 150 nucleotides
PGA1_c08390: PGA1_c08390 - putative transcriptional regulator, AraC family, at 868,645 to 869,736
_c08390
PGA1_c08400: PGA1_c08400 - Uncharacterized conserved protein, at 869,869 to 870,786
_c08400
PGA1_c08410: PGA1_c08410 - hypothetical protein, at 870,880 to 871,212
_c08410
PGA1_c08420: PGA1_c08420 - putative 3-hydroxyacyl-CoA dehydrogenase, at 871,363 to 872,838
_c08420
Position (kb) 869
870
871 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 868.934 kb on - strand, within PGA1_c08390 at 869.060 kb on + strand, within PGA1_c08390 at 869.060 kb on + strand, within PGA1_c08390 at 869.068 kb on - strand, within PGA1_c08390 at 869.068 kb on - strand, within PGA1_c08390 at 869.068 kb on - strand, within PGA1_c08390 at 869.068 kb on - strand, within PGA1_c08390 at 869.088 kb on + strand, within PGA1_c08390 at 869.096 kb on - strand, within PGA1_c08390 at 869.247 kb on - strand, within PGA1_c08390 at 869.259 kb on + strand, within PGA1_c08390 at 869.466 kb on + strand, within PGA1_c08390 at 869.506 kb on - strand, within PGA1_c08390 at 869.532 kb on + strand, within PGA1_c08390 at 869.584 kb on - strand, within PGA1_c08390 at 869.587 kb on + strand, within PGA1_c08390 at 869.595 kb on - strand, within PGA1_c08390 at 869.786 kb on + strand at 869.786 kb on + strand at 869.786 kb on + strand at 869.794 kb on - strand at 869.819 kb on + strand at 869.819 kb on + strand at 869.819 kb on + strand at 869.827 kb on - strand at 869.827 kb on - strand at 869.827 kb on - strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.842 kb on + strand at 869.850 kb on - strand at 869.852 kb on - strand at 869.919 kb on - strand at 869.925 kb on - strand at 869.934 kb on + strand at 869.950 kb on - strand at 870.074 kb on + strand, within PGA1_c08400 at 870.074 kb on + strand, within PGA1_c08400 at 870.082 kb on - strand, within PGA1_c08400 at 870.082 kb on - strand, within PGA1_c08400 at 870.134 kb on - strand, within PGA1_c08400 at 870.146 kb on - strand, within PGA1_c08400 at 870.154 kb on - strand, within PGA1_c08400 at 870.156 kb on - strand, within PGA1_c08400 at 870.219 kb on + strand, within PGA1_c08400 at 870.255 kb on + strand, within PGA1_c08400 at 870.291 kb on - strand, within PGA1_c08400 at 870.323 kb on - strand, within PGA1_c08400 at 870.323 kb on - strand, within PGA1_c08400 at 870.340 kb on + strand, within PGA1_c08400 at 870.340 kb on + strand, within PGA1_c08400 at 870.345 kb on + strand, within PGA1_c08400 at 870.390 kb on + strand at 870.441 kb on - strand, within PGA1_c08400 at 870.443 kb on + strand, within PGA1_c08400 at 870.443 kb on + strand, within PGA1_c08400 at 870.462 kb on + strand, within PGA1_c08400 at 870.470 kb on - strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.474 kb on + strand, within PGA1_c08400 at 870.482 kb on - strand, within PGA1_c08400 at 870.482 kb on - strand, within PGA1_c08400 at 870.503 kb on + strand, within PGA1_c08400 at 870.503 kb on + strand, within PGA1_c08400 at 870.522 kb on - strand, within PGA1_c08400 at 870.603 kb on - strand, within PGA1_c08400 at 870.620 kb on - strand, within PGA1_c08400 at 870.631 kb on - strand, within PGA1_c08400 at 870.635 kb on + strand, within PGA1_c08400 at 870.636 kb on + strand, within PGA1_c08400 at 870.643 kb on - strand, within PGA1_c08400 at 870.643 kb on - strand, within PGA1_c08400 at 870.691 kb on + strand, within PGA1_c08400 at 870.691 kb on + strand, within PGA1_c08400 at 870.699 kb on - strand at 870.705 kb on + strand at 870.713 kb on + strand at 870.728 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.750 kb on + strand at 870.756 kb on - strand at 870.756 kb on - strand at 870.756 kb on - strand at 870.758 kb on - strand at 870.759 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.816 kb on + strand at 870.818 kb on + strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.824 kb on - strand at 870.837 kb on + strand at 870.837 kb on + strand at 870.837 kb on + strand at 870.842 kb on + strand at 870.845 kb on - strand at 870.860 kb on + strand at 870.904 kb on + strand at 870.923 kb on + strand, within PGA1_c08410 at 870.926 kb on + strand, within PGA1_c08410 at 870.930 kb on + strand, within PGA1_c08410 at 870.934 kb on - strand, within PGA1_c08410 at 870.936 kb on + strand, within PGA1_c08410 at 870.936 kb on + strand, within PGA1_c08410 at 870.992 kb on + strand, within PGA1_c08410 at 870.992 kb on + strand, within PGA1_c08410 at 871.000 kb on - strand, within PGA1_c08410 at 871.022 kb on - strand, within PGA1_c08410 at 871.050 kb on - strand, within PGA1_c08410 at 871.051 kb on + strand, within PGA1_c08410 at 871.082 kb on + strand, within PGA1_c08410 at 871.139 kb on + strand, within PGA1_c08410 at 871.147 kb on - strand, within PGA1_c08410 at 871.175 kb on + strand, within PGA1_c08410 at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.185 kb on + strand at 871.193 kb on - strand at 871.207 kb on + strand at 871.215 kb on - strand at 871.225 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.301 kb on + strand at 871.309 kb on - strand at 871.381 kb on - strand at 871.391 kb on - strand at 871.391 kb on - strand at 871.396 kb on - strand at 871.396 kb on - strand at 871.421 kb on - strand at 871.464 kb on + strand at 871.472 kb on - strand at 871.500 kb on - strand at 871.500 kb on - strand at 871.500 kb on - strand at 871.546 kb on + strand, within PGA1_c08420 at 871.584 kb on + strand, within PGA1_c08420 at 871.656 kb on - strand, within PGA1_c08420 at 871.656 kb on - strand, within PGA1_c08420 at 871.735 kb on + strand, within PGA1_c08420 at 871.735 kb on + strand, within PGA1_c08420 at 871.748 kb on - strand, within PGA1_c08420 at 871.755 kb on + strand, within PGA1_c08420 at 871.755 kb on + strand, within PGA1_c08420 at 871.763 kb on - strand, within PGA1_c08420
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 868,934 - PGA1_c08390 0.26 -2.3 869,060 + PGA1_c08390 0.38 +0.8 869,060 + PGA1_c08390 0.38 +0.2 869,068 - PGA1_c08390 0.39 -1.3 869,068 - PGA1_c08390 0.39 -0.3 869,068 - PGA1_c08390 0.39 -0.5 869,068 - PGA1_c08390 0.39 +0.5 869,088 + PGA1_c08390 0.41 -2.1 869,096 - PGA1_c08390 0.41 -1.1 869,247 - PGA1_c08390 0.55 +0.8 869,259 + PGA1_c08390 0.56 -0.7 869,466 + PGA1_c08390 0.75 -0.6 869,506 - PGA1_c08390 0.79 +0.3 869,532 + PGA1_c08390 0.81 -1.6 869,584 - PGA1_c08390 0.86 -2.1 869,587 + PGA1_c08390 0.86 +0.1 869,595 - PGA1_c08390 0.87 +0.1 869,786 + -0.9 869,786 + -0.0 869,786 + +0.1 869,794 - -1.9 869,819 + +0.7 869,819 + -0.6 869,819 + +0.5 869,827 - -2.1 869,827 - -0.4 869,827 - +0.2 869,842 + -2.1 869,842 + +0.9 869,842 + +1.5 869,842 + +0.2 869,842 + -0.6 869,842 + -0.8 869,842 + -2.0 869,842 + -0.1 869,842 + +0.2 869,842 + -0.1 869,842 + +1.7 869,842 + -0.7 869,842 + -0.1 869,842 + +0.3 869,850 - +0.9 869,852 - -1.6 869,919 - -0.4 869,925 - -1.1 869,934 + -0.5 869,950 - +1.2 870,074 + PGA1_c08400 0.22 -0.7 870,074 + PGA1_c08400 0.22 +1.9 870,082 - PGA1_c08400 0.23 +1.0 870,082 - PGA1_c08400 0.23 -2.8 870,134 - PGA1_c08400 0.29 +0.7 870,146 - PGA1_c08400 0.30 -1.1 870,154 - PGA1_c08400 0.31 -1.7 870,156 - PGA1_c08400 0.31 +0.0 870,219 + PGA1_c08400 0.38 -0.2 870,255 + PGA1_c08400 0.42 +2.5 870,291 - PGA1_c08400 0.46 -2.3 870,323 - PGA1_c08400 0.49 -0.4 870,323 - PGA1_c08400 0.49 +0.3 870,340 + PGA1_c08400 0.51 +1.3 870,340 + PGA1_c08400 0.51 -0.6 870,345 + PGA1_c08400 0.52 -0.3 870,390 + +0.7 870,441 - PGA1_c08400 0.62 -2.7 870,443 + PGA1_c08400 0.63 -0.0 870,443 + PGA1_c08400 0.63 -0.1 870,462 + PGA1_c08400 0.65 -0.5 870,470 - PGA1_c08400 0.65 +1.1 870,474 + PGA1_c08400 0.66 +0.4 870,474 + PGA1_c08400 0.66 -0.1 870,474 + PGA1_c08400 0.66 -0.5 870,474 + PGA1_c08400 0.66 +0.0 870,482 - PGA1_c08400 0.67 -0.2 870,482 - PGA1_c08400 0.67 -1.0 870,503 + PGA1_c08400 0.69 -2.3 870,503 + PGA1_c08400 0.69 -1.3 870,522 - PGA1_c08400 0.71 +0.4 870,603 - PGA1_c08400 0.80 -0.3 870,620 - PGA1_c08400 0.82 -0.9 870,631 - PGA1_c08400 0.83 -3.0 870,635 + PGA1_c08400 0.83 -0.2 870,636 + PGA1_c08400 0.84 -0.3 870,643 - PGA1_c08400 0.84 -0.9 870,643 - PGA1_c08400 0.84 -1.4 870,691 + PGA1_c08400 0.90 -0.2 870,691 + PGA1_c08400 0.90 +1.9 870,699 - +1.2 870,705 + +0.2 870,713 + -0.7 870,728 + -3.0 870,750 + +0.7 870,750 + +0.9 870,750 + -3.0 870,750 + +1.0 870,756 - -2.8 870,756 - +0.3 870,756 - +1.2 870,758 - +0.8 870,759 + +1.3 870,816 + +1.6 870,816 + +1.2 870,816 + +0.5 870,816 + -1.3 870,816 + +0.1 870,816 + -2.5 870,816 + -0.1 870,816 + +1.0 870,816 + +0.7 870,816 + -0.4 870,816 + -1.4 870,816 + -1.0 870,816 + +0.5 870,816 + +0.2 870,816 + +0.0 870,818 + -1.3 870,824 - +1.3 870,824 - +1.4 870,824 - -0.2 870,824 - +0.4 870,824 - -0.6 870,837 + +1.2 870,837 + -0.3 870,837 + -0.5 870,842 + -0.6 870,845 - +0.3 870,860 + +0.7 870,904 + +0.1 870,923 + PGA1_c08410 0.13 +0.3 870,926 + PGA1_c08410 0.14 +1.2 870,930 + PGA1_c08410 0.15 -0.0 870,934 - PGA1_c08410 0.16 -1.2 870,936 + PGA1_c08410 0.17 +0.1 870,936 + PGA1_c08410 0.17 -0.9 870,992 + PGA1_c08410 0.34 +1.2 870,992 + PGA1_c08410 0.34 +0.1 871,000 - PGA1_c08410 0.36 -0.6 871,022 - PGA1_c08410 0.43 -1.7 871,050 - PGA1_c08410 0.51 +0.0 871,051 + PGA1_c08410 0.51 -0.1 871,082 + PGA1_c08410 0.61 +1.3 871,139 + PGA1_c08410 0.78 +0.7 871,147 - PGA1_c08410 0.80 -1.8 871,175 + PGA1_c08410 0.89 -1.8 871,185 + +0.7 871,185 + +1.1 871,185 + +0.9 871,185 + -0.9 871,185 + +0.8 871,193 - -1.1 871,207 + -2.5 871,215 - +1.7 871,225 + +0.3 871,301 + -0.3 871,301 + +0.5 871,301 + -1.1 871,301 + +0.1 871,309 - +1.2 871,381 - +0.0 871,391 - -0.2 871,391 - -1.9 871,396 - -2.2 871,396 - -1.2 871,421 - -0.7 871,464 + +1.2 871,472 - +0.1 871,500 - +0.5 871,500 - +0.9 871,500 - -0.2 871,546 + PGA1_c08420 0.12 +0.4 871,584 + PGA1_c08420 0.15 +1.7 871,656 - PGA1_c08420 0.20 -0.0 871,656 - PGA1_c08420 0.20 +0.2 871,735 + PGA1_c08420 0.25 -0.4 871,735 + PGA1_c08420 0.25 -1.1 871,748 - PGA1_c08420 0.26 -2.2 871,755 + PGA1_c08420 0.27 -0.9 871,755 + PGA1_c08420 0.27 +0.7 871,763 - PGA1_c08420 0.27 -3.1
Or see this region's nucleotide sequence