Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00830 and PGA1_c00840 are separated by 307 nucleotides PGA1_c00840 and PGA1_c00850 are separated by 326 nucleotides PGA1_c00850 and PGA1_c00860 are separated by 156 nucleotides
PGA1_c00830: PGA1_c00830 - putative threonine-phosphate decarboxylase CobC, at 81,685 to 82,755
_c00830
PGA1_c00840: PGA1_c00840 - glutathione transferase-like protein, at 83,063 to 84,037
_c00840
PGA1_c00850: PGA1_c00850 - hypothetical protein, at 84,364 to 84,726
_c00850
PGA1_c00860: PGA1_c00860 - cystathionine beta-lyase PatB, at 84,883 to 86,055
_c00860
Position (kb) 83
84
85 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 82.647 kb on + strand, within PGA1_c00830 at 82.648 kb on - strand, within PGA1_c00830 at 82.655 kb on - strand at 82.671 kb on + strand at 82.735 kb on + strand at 82.761 kb on + strand at 82.776 kb on + strand at 82.776 kb on + strand at 82.776 kb on + strand at 82.784 kb on - strand at 82.784 kb on - strand at 82.784 kb on - strand at 82.803 kb on - strand at 82.812 kb on + strand at 82.815 kb on - strand at 82.832 kb on + strand at 82.839 kb on + strand at 82.915 kb on + strand at 82.918 kb on - strand at 82.920 kb on + strand at 82.923 kb on - strand at 82.928 kb on + strand at 82.929 kb on + strand at 82.937 kb on - strand at 82.950 kb on - strand at 82.956 kb on - strand at 82.967 kb on + strand at 83.007 kb on + strand at 83.018 kb on + strand at 83.051 kb on - strand at 83.075 kb on + strand at 83.080 kb on + strand at 83.080 kb on + strand at 83.088 kb on - strand at 83.088 kb on - strand at 83.122 kb on - strand at 83.124 kb on + strand at 83.132 kb on - strand at 83.133 kb on - strand at 83.147 kb on - strand at 83.170 kb on - strand, within PGA1_c00840 at 83.173 kb on + strand, within PGA1_c00840 at 83.173 kb on + strand, within PGA1_c00840 at 83.175 kb on - strand, within PGA1_c00840 at 83.179 kb on - strand, within PGA1_c00840 at 83.181 kb on - strand, within PGA1_c00840 at 83.181 kb on - strand, within PGA1_c00840 at 83.181 kb on - strand, within PGA1_c00840 at 83.181 kb on - strand, within PGA1_c00840 at 83.199 kb on - strand, within PGA1_c00840 at 83.211 kb on - strand, within PGA1_c00840 at 83.222 kb on + strand, within PGA1_c00840 at 83.224 kb on - strand, within PGA1_c00840 at 83.224 kb on - strand, within PGA1_c00840 at 83.270 kb on - strand, within PGA1_c00840 at 83.272 kb on - strand, within PGA1_c00840 at 83.286 kb on + strand, within PGA1_c00840 at 83.301 kb on + strand, within PGA1_c00840 at 83.314 kb on - strand, within PGA1_c00840 at 83.343 kb on - strand, within PGA1_c00840 at 83.343 kb on - strand, within PGA1_c00840 at 83.355 kb on - strand, within PGA1_c00840 at 83.382 kb on - strand, within PGA1_c00840 at 83.383 kb on + strand, within PGA1_c00840 at 83.384 kb on + strand, within PGA1_c00840 at 83.392 kb on - strand, within PGA1_c00840 at 83.450 kb on + strand, within PGA1_c00840 at 83.494 kb on - strand, within PGA1_c00840 at 83.496 kb on + strand, within PGA1_c00840 at 83.517 kb on - strand, within PGA1_c00840 at 83.518 kb on + strand, within PGA1_c00840 at 83.533 kb on + strand, within PGA1_c00840 at 83.541 kb on - strand, within PGA1_c00840 at 83.554 kb on + strand, within PGA1_c00840 at 83.562 kb on - strand, within PGA1_c00840 at 83.562 kb on - strand, within PGA1_c00840 at 83.565 kb on + strand, within PGA1_c00840 at 83.565 kb on + strand, within PGA1_c00840 at 83.565 kb on + strand, within PGA1_c00840 at 83.585 kb on - strand, within PGA1_c00840 at 83.589 kb on + strand, within PGA1_c00840 at 83.592 kb on - strand, within PGA1_c00840 at 83.650 kb on + strand, within PGA1_c00840 at 83.658 kb on - strand, within PGA1_c00840 at 83.663 kb on - strand, within PGA1_c00840 at 83.663 kb on - strand, within PGA1_c00840 at 83.675 kb on + strand, within PGA1_c00840 at 83.675 kb on + strand, within PGA1_c00840 at 83.703 kb on - strand, within PGA1_c00840 at 83.708 kb on - strand, within PGA1_c00840 at 83.721 kb on - strand, within PGA1_c00840 at 83.722 kb on - strand, within PGA1_c00840 at 83.747 kb on + strand, within PGA1_c00840 at 83.748 kb on + strand, within PGA1_c00840 at 83.800 kb on - strand, within PGA1_c00840 at 83.834 kb on + strand, within PGA1_c00840 at 83.841 kb on + strand, within PGA1_c00840 at 83.841 kb on + strand, within PGA1_c00840 at 83.842 kb on + strand, within PGA1_c00840 at 83.849 kb on - strand, within PGA1_c00840 at 83.849 kb on - strand, within PGA1_c00840 at 83.855 kb on - strand, within PGA1_c00840 at 83.908 kb on - strand, within PGA1_c00840 at 83.913 kb on + strand, within PGA1_c00840 at 84.044 kb on + strand at 84.046 kb on + strand at 84.052 kb on - strand at 84.052 kb on - strand at 84.054 kb on - strand at 84.054 kb on - strand at 84.064 kb on - strand at 84.076 kb on - strand at 84.084 kb on - strand at 84.084 kb on - strand at 84.088 kb on - strand at 84.105 kb on - strand at 84.139 kb on + strand at 84.146 kb on + strand at 84.146 kb on + strand at 84.146 kb on + strand at 84.154 kb on - strand at 84.161 kb on + strand at 84.185 kb on + strand at 84.190 kb on + strand at 84.194 kb on + strand at 84.202 kb on + strand at 84.202 kb on + strand at 84.220 kb on - strand at 84.263 kb on + strand at 84.274 kb on + strand at 84.279 kb on - strand at 84.279 kb on - strand at 84.282 kb on - strand at 84.282 kb on - strand at 84.282 kb on - strand at 84.325 kb on + strand at 84.366 kb on + strand at 84.401 kb on - strand, within PGA1_c00850 at 84.412 kb on + strand, within PGA1_c00850 at 84.414 kb on + strand, within PGA1_c00850 at 84.414 kb on + strand, within PGA1_c00850 at 84.415 kb on - strand, within PGA1_c00850 at 84.415 kb on - strand, within PGA1_c00850 at 84.422 kb on - strand, within PGA1_c00850 at 84.422 kb on - strand, within PGA1_c00850 at 84.521 kb on + strand, within PGA1_c00850 at 84.540 kb on + strand, within PGA1_c00850 at 84.607 kb on + strand, within PGA1_c00850 at 84.607 kb on + strand, within PGA1_c00850 at 84.677 kb on + strand, within PGA1_c00850 at 84.687 kb on - strand, within PGA1_c00850 at 84.689 kb on + strand, within PGA1_c00850 at 84.689 kb on + strand, within PGA1_c00850 at 84.699 kb on + strand at 84.728 kb on - strand at 84.736 kb on + strand at 84.739 kb on - strand at 84.756 kb on - strand at 84.765 kb on - strand at 84.856 kb on - strand at 84.864 kb on + strand at 84.864 kb on + strand at 84.872 kb on - strand at 84.872 kb on - strand at 84.872 kb on - strand at 84.882 kb on + strand at 84.926 kb on + strand at 84.926 kb on + strand at 84.927 kb on + strand at 84.934 kb on - strand at 84.934 kb on - strand at 85.026 kb on + strand, within PGA1_c00860 at 85.026 kb on + strand, within PGA1_c00860 at 85.026 kb on + strand, within PGA1_c00860 at 85.026 kb on + strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860 at 85.034 kb on - strand, within PGA1_c00860
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 82,647 + PGA1_c00830 0.90 -0.6 82,648 - PGA1_c00830 0.90 -1.3 82,655 - -0.6 82,671 + -0.6 82,735 + -0.1 82,761 + +0.5 82,776 + +1.0 82,776 + -1.2 82,776 + +1.3 82,784 - -0.5 82,784 - +0.7 82,784 - +1.0 82,803 - -0.9 82,812 + +0.0 82,815 - +2.6 82,832 + -0.7 82,839 + +1.0 82,915 + -1.1 82,918 - -0.2 82,920 + -1.0 82,923 - -0.1 82,928 + -2.7 82,929 + -1.0 82,937 - +0.8 82,950 - +0.8 82,956 - +1.2 82,967 + -0.5 83,007 + +0.8 83,018 + +0.5 83,051 - +1.5 83,075 + +1.4 83,080 + +0.3 83,080 + +0.7 83,088 - +0.7 83,088 - +1.3 83,122 - +0.1 83,124 + +1.0 83,132 - -0.6 83,133 - -1.9 83,147 - +0.6 83,170 - PGA1_c00840 0.11 -1.0 83,173 + PGA1_c00840 0.11 +0.6 83,173 + PGA1_c00840 0.11 -1.9 83,175 - PGA1_c00840 0.11 -0.3 83,179 - PGA1_c00840 0.12 +2.0 83,181 - PGA1_c00840 0.12 -0.9 83,181 - PGA1_c00840 0.12 -2.2 83,181 - PGA1_c00840 0.12 +0.6 83,181 - PGA1_c00840 0.12 +0.6 83,199 - PGA1_c00840 0.14 -3.6 83,211 - PGA1_c00840 0.15 +1.0 83,222 + PGA1_c00840 0.16 +0.0 83,224 - PGA1_c00840 0.17 -0.9 83,224 - PGA1_c00840 0.17 -1.8 83,270 - PGA1_c00840 0.21 +0.4 83,272 - PGA1_c00840 0.21 -0.7 83,286 + PGA1_c00840 0.23 -2.3 83,301 + PGA1_c00840 0.24 +0.5 83,314 - PGA1_c00840 0.26 -2.2 83,343 - PGA1_c00840 0.29 +0.1 83,343 - PGA1_c00840 0.29 -1.7 83,355 - PGA1_c00840 0.30 -2.1 83,382 - PGA1_c00840 0.33 -2.2 83,383 + PGA1_c00840 0.33 +0.8 83,384 + PGA1_c00840 0.33 -0.7 83,392 - PGA1_c00840 0.34 -0.5 83,450 + PGA1_c00840 0.40 -2.9 83,494 - PGA1_c00840 0.44 +1.8 83,496 + PGA1_c00840 0.44 -1.0 83,517 - PGA1_c00840 0.47 -0.4 83,518 + PGA1_c00840 0.47 +0.0 83,533 + PGA1_c00840 0.48 -2.7 83,541 - PGA1_c00840 0.49 +0.6 83,554 + PGA1_c00840 0.50 -2.7 83,562 - PGA1_c00840 0.51 +0.7 83,562 - PGA1_c00840 0.51 +0.8 83,565 + PGA1_c00840 0.51 -1.2 83,565 + PGA1_c00840 0.51 +0.5 83,565 + PGA1_c00840 0.51 -3.2 83,585 - PGA1_c00840 0.54 +1.7 83,589 + PGA1_c00840 0.54 -2.5 83,592 - PGA1_c00840 0.54 +0.7 83,650 + PGA1_c00840 0.60 -0.5 83,658 - PGA1_c00840 0.61 +0.1 83,663 - PGA1_c00840 0.62 +0.9 83,663 - PGA1_c00840 0.62 -0.4 83,675 + PGA1_c00840 0.63 +1.1 83,675 + PGA1_c00840 0.63 +1.0 83,703 - PGA1_c00840 0.66 -3.1 83,708 - PGA1_c00840 0.66 +0.3 83,721 - PGA1_c00840 0.67 +0.7 83,722 - PGA1_c00840 0.68 +0.2 83,747 + PGA1_c00840 0.70 +0.9 83,748 + PGA1_c00840 0.70 -1.8 83,800 - PGA1_c00840 0.76 -0.4 83,834 + PGA1_c00840 0.79 +0.0 83,841 + PGA1_c00840 0.80 -1.1 83,841 + PGA1_c00840 0.80 +0.9 83,842 + PGA1_c00840 0.80 -0.2 83,849 - PGA1_c00840 0.81 -0.1 83,849 - PGA1_c00840 0.81 -0.1 83,855 - PGA1_c00840 0.81 -0.6 83,908 - PGA1_c00840 0.87 -3.5 83,913 + PGA1_c00840 0.87 -0.6 84,044 + +0.1 84,046 + +1.5 84,052 - +0.1 84,052 - +2.2 84,054 - +0.5 84,054 - +0.6 84,064 - -1.2 84,076 - +0.2 84,084 - +1.2 84,084 - +1.8 84,088 - -0.2 84,105 - +0.6 84,139 + -2.0 84,146 + +0.4 84,146 + -1.0 84,146 + +0.8 84,154 - +0.0 84,161 + +1.2 84,185 + +0.8 84,190 + -1.6 84,194 + +0.0 84,202 + +0.3 84,202 + +0.3 84,220 - +0.8 84,263 + -1.8 84,274 + -1.3 84,279 - +0.7 84,279 - -1.0 84,282 - -1.6 84,282 - +1.7 84,282 - +0.2 84,325 + -2.0 84,366 + +1.8 84,401 - PGA1_c00850 0.10 -0.8 84,412 + PGA1_c00850 0.13 +0.9 84,414 + PGA1_c00850 0.14 +1.0 84,414 + PGA1_c00850 0.14 +0.8 84,415 - PGA1_c00850 0.14 +0.0 84,415 - PGA1_c00850 0.14 +0.2 84,422 - PGA1_c00850 0.16 +0.0 84,422 - PGA1_c00850 0.16 -0.3 84,521 + PGA1_c00850 0.43 -1.3 84,540 + PGA1_c00850 0.48 +1.4 84,607 + PGA1_c00850 0.67 -3.5 84,607 + PGA1_c00850 0.67 +1.4 84,677 + PGA1_c00850 0.86 -0.3 84,687 - PGA1_c00850 0.89 +0.9 84,689 + PGA1_c00850 0.90 -0.1 84,689 + PGA1_c00850 0.90 +0.0 84,699 + +0.0 84,728 - -1.0 84,736 + +1.5 84,739 - -1.2 84,756 - +1.0 84,765 - +1.0 84,856 - -1.5 84,864 + +1.1 84,864 + +0.7 84,872 - +0.5 84,872 - +1.0 84,872 - -0.6 84,882 + +0.6 84,926 + +1.9 84,926 + +0.2 84,927 + +0.3 84,934 - +0.3 84,934 - +0.9 85,026 + PGA1_c00860 0.12 +0.4 85,026 + PGA1_c00860 0.12 +0.1 85,026 + PGA1_c00860 0.12 +0.6 85,026 + PGA1_c00860 0.12 +1.6 85,034 - PGA1_c00860 0.13 -2.8 85,034 - PGA1_c00860 0.13 +1.8 85,034 - PGA1_c00860 0.13 +0.7 85,034 - PGA1_c00860 0.13 +1.5 85,034 - PGA1_c00860 0.13 +0.5 85,034 - PGA1_c00860 0.13 +1.1 85,034 - PGA1_c00860 0.13 -0.0 85,034 - PGA1_c00860 0.13 -0.5 85,034 - PGA1_c00860 0.13 +0.0 85,034 - PGA1_c00860 0.13 -0.2
Or see this region's nucleotide sequence