Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07510 and PGA1_c07520 are separated by 31 nucleotides PGA1_c07520 and PGA1_c07530 are separated by 64 nucleotides PGA1_c07530 and PGA1_c07540 are separated by 362 nucleotides
PGA1_c07510: PGA1_c07510 - DNA/RNA helicase-like protein, at 774,796 to 777,813
_c07510
PGA1_c07520: PGA1_c07520 - putative heat shock protein, at 777,845 to 778,210
_c07520
PGA1_c07530: PGA1_c07530 - ferredoxin FdxA, at 778,275 to 778,613
_c07530
PGA1_c07540: PGA1_c07540 - transcription factor carD-like protein, at 778,976 to 779,488
_c07540
Position (kb) 778
779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 777.304 kb on + strand, within PGA1_c07510 at 777.310 kb on - strand, within PGA1_c07510 at 777.521 kb on - strand at 777.528 kb on - strand at 777.544 kb on - strand at 777.608 kb on - strand at 777.714 kb on - strand at 777.717 kb on - strand at 777.720 kb on + strand at 777.720 kb on + strand at 777.768 kb on - strand at 777.792 kb on - strand at 777.796 kb on - strand at 777.900 kb on + strand, within PGA1_c07520 at 777.900 kb on + strand, within PGA1_c07520 at 777.900 kb on - strand, within PGA1_c07520 at 777.922 kb on + strand, within PGA1_c07520 at 777.930 kb on - strand, within PGA1_c07520 at 778.057 kb on + strand, within PGA1_c07520 at 778.060 kb on - strand, within PGA1_c07520 at 778.150 kb on - strand, within PGA1_c07520 at 778.184 kb on - strand at 778.633 kb on - strand at 778.650 kb on - strand at 778.738 kb on + strand at 779.452 kb on + strand at 779.503 kb on + strand at 779.561 kb on - strand at 779.598 kb on + strand at 779.606 kb on - strand at 779.606 kb on - strand at 779.612 kb on + strand at 779.612 kb on + strand at 779.612 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 777,304 + PGA1_c07510 0.83 -1.9 777,310 - PGA1_c07510 0.83 +1.3 777,521 - -1.9 777,528 - -1.1 777,544 - -0.1 777,608 - -0.3 777,714 - +0.4 777,717 - +0.8 777,720 + +0.0 777,720 + +0.2 777,768 - +2.2 777,792 - -0.3 777,796 - +0.2 777,900 + PGA1_c07520 0.15 +0.2 777,900 + PGA1_c07520 0.15 -1.6 777,900 - PGA1_c07520 0.15 +0.4 777,922 + PGA1_c07520 0.21 -1.5 777,930 - PGA1_c07520 0.23 -1.4 778,057 + PGA1_c07520 0.58 -1.5 778,060 - PGA1_c07520 0.59 -2.9 778,150 - PGA1_c07520 0.83 +0.3 778,184 - +0.7 778,633 - +0.0 778,650 - -1.5 778,738 + -0.0 779,452 + +0.6 779,503 + -0.3 779,561 - +0.7 779,598 + -1.3 779,606 - +1.5 779,606 - +0.9 779,612 + -1.1 779,612 + -1.5 779,612 + -0.2
Or see this region's nucleotide sequence