Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07420 and PGA1_c07430 are separated by 134 nucleotides PGA1_c07430 and PGA1_c07440 are separated by 18 nucleotides
PGA1_c07420: PGA1_c07420 - extracellular solute-binding protein, at 765,629 to 766,879
_c07420
PGA1_c07430: PGA1_c07430 - putative transcriptional regulator, IclR family, at 767,014 to 767,805
_c07430
PGA1_c07440: PGA1_c07440 - ABC transporter, ATP binding protein, at 767,824 to 768,885
_c07440
Position (kb) 767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 766.046 kb on + strand, within PGA1_c07420 at 766.051 kb on + strand, within PGA1_c07420 at 766.051 kb on + strand, within PGA1_c07420 at 766.124 kb on + strand, within PGA1_c07420 at 766.151 kb on - strand, within PGA1_c07420 at 766.157 kb on - strand, within PGA1_c07420 at 766.194 kb on - strand, within PGA1_c07420 at 766.222 kb on + strand, within PGA1_c07420 at 766.250 kb on - strand, within PGA1_c07420 at 766.255 kb on - strand, within PGA1_c07420 at 766.265 kb on + strand, within PGA1_c07420 at 766.314 kb on + strand, within PGA1_c07420 at 766.374 kb on - strand, within PGA1_c07420 at 766.387 kb on + strand, within PGA1_c07420 at 766.405 kb on - strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.408 kb on + strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.416 kb on - strand, within PGA1_c07420 at 766.423 kb on + strand, within PGA1_c07420 at 766.435 kb on + strand, within PGA1_c07420 at 766.443 kb on - strand, within PGA1_c07420 at 766.459 kb on + strand, within PGA1_c07420 at 766.466 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.467 kb on + strand, within PGA1_c07420 at 766.474 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.475 kb on - strand, within PGA1_c07420 at 766.515 kb on + strand, within PGA1_c07420 at 766.520 kb on + strand, within PGA1_c07420 at 766.548 kb on + strand, within PGA1_c07420 at 766.595 kb on - strand, within PGA1_c07420 at 766.667 kb on + strand, within PGA1_c07420 at 766.690 kb on + strand, within PGA1_c07420 at 766.762 kb on + strand at 766.767 kb on + strand at 766.767 kb on + strand at 766.768 kb on - strand at 766.816 kb on + strand at 766.826 kb on + strand at 766.826 kb on + strand at 766.831 kb on + strand at 766.831 kb on + strand at 766.834 kb on - strand at 766.834 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.839 kb on - strand at 766.983 kb on - strand at 767.000 kb on + strand at 767.011 kb on + strand at 767.140 kb on - strand, within PGA1_c07430 at 767.162 kb on + strand, within PGA1_c07430 at 767.292 kb on - strand, within PGA1_c07430 at 767.315 kb on + strand, within PGA1_c07430 at 767.357 kb on - strand, within PGA1_c07430 at 767.412 kb on + strand, within PGA1_c07430 at 767.432 kb on + strand, within PGA1_c07430 at 767.482 kb on + strand, within PGA1_c07430 at 767.533 kb on + strand, within PGA1_c07430 at 767.540 kb on + strand, within PGA1_c07430 at 767.541 kb on - strand, within PGA1_c07430 at 767.559 kb on - strand, within PGA1_c07430 at 767.607 kb on - strand, within PGA1_c07430 at 767.657 kb on - strand, within PGA1_c07430 at 767.756 kb on + strand at 767.779 kb on + strand at 767.814 kb on - strand at 767.841 kb on + strand at 767.940 kb on - strand, within PGA1_c07440 at 767.988 kb on - strand, within PGA1_c07440 at 768.018 kb on + strand, within PGA1_c07440 at 768.024 kb on + strand, within PGA1_c07440 at 768.083 kb on + strand, within PGA1_c07440 at 768.092 kb on + strand, within PGA1_c07440 at 768.110 kb on - strand, within PGA1_c07440 at 768.221 kb on - strand, within PGA1_c07440 at 768.250 kb on + strand, within PGA1_c07440 at 768.275 kb on + strand, within PGA1_c07440 at 768.275 kb on + strand, within PGA1_c07440 at 768.275 kb on + strand, within PGA1_c07440 at 768.275 kb on + strand, within PGA1_c07440 at 768.275 kb on + strand, within PGA1_c07440 at 768.283 kb on - strand, within PGA1_c07440 at 768.309 kb on - strand, within PGA1_c07440 at 768.314 kb on - strand, within PGA1_c07440 at 768.314 kb on - strand, within PGA1_c07440 at 768.384 kb on + strand, within PGA1_c07440 at 768.395 kb on + strand, within PGA1_c07440 at 768.395 kb on + strand, within PGA1_c07440 at 768.395 kb on + strand, within PGA1_c07440 at 768.403 kb on - strand, within PGA1_c07440 at 768.405 kb on + strand, within PGA1_c07440 at 768.405 kb on + strand, within PGA1_c07440 at 768.405 kb on + strand, within PGA1_c07440 at 768.455 kb on + strand, within PGA1_c07440 at 768.460 kb on + strand, within PGA1_c07440 at 768.463 kb on - strand, within PGA1_c07440 at 768.463 kb on - strand, within PGA1_c07440 at 768.463 kb on - strand, within PGA1_c07440 at 768.465 kb on + strand, within PGA1_c07440 at 768.534 kb on - strand, within PGA1_c07440 at 768.534 kb on - strand, within PGA1_c07440 at 768.554 kb on + strand, within PGA1_c07440 at 768.572 kb on - strand, within PGA1_c07440 at 768.589 kb on + strand, within PGA1_c07440 at 768.715 kb on - strand, within PGA1_c07440 at 768.732 kb on + strand, within PGA1_c07440 at 768.734 kb on + strand, within PGA1_c07440 at 768.790 kb on + strand at 768.790 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 766,046 + PGA1_c07420 0.33 -1.3 766,051 + PGA1_c07420 0.34 -0.5 766,051 + PGA1_c07420 0.34 +2.0 766,124 + PGA1_c07420 0.40 +0.2 766,151 - PGA1_c07420 0.42 +1.0 766,157 - PGA1_c07420 0.42 +0.0 766,194 - PGA1_c07420 0.45 -0.4 766,222 + PGA1_c07420 0.47 +0.6 766,250 - PGA1_c07420 0.50 +1.7 766,255 - PGA1_c07420 0.50 -0.3 766,265 + PGA1_c07420 0.51 +1.9 766,314 + PGA1_c07420 0.55 -1.1 766,374 - PGA1_c07420 0.60 -0.6 766,387 + PGA1_c07420 0.61 +0.9 766,405 - PGA1_c07420 0.62 +1.3 766,408 + PGA1_c07420 0.62 +1.8 766,408 + PGA1_c07420 0.62 +0.9 766,408 + PGA1_c07420 0.62 -0.6 766,416 - PGA1_c07420 0.63 -2.1 766,416 - PGA1_c07420 0.63 -1.3 766,416 - PGA1_c07420 0.63 +0.4 766,423 + PGA1_c07420 0.63 -0.5 766,435 + PGA1_c07420 0.64 -2.1 766,443 - PGA1_c07420 0.65 +0.9 766,459 + PGA1_c07420 0.66 -0.2 766,466 + PGA1_c07420 0.67 -1.4 766,467 + PGA1_c07420 0.67 +0.7 766,467 + PGA1_c07420 0.67 -0.6 766,467 + PGA1_c07420 0.67 -0.6 766,467 + PGA1_c07420 0.67 +0.4 766,467 + PGA1_c07420 0.67 +0.1 766,467 + PGA1_c07420 0.67 +0.9 766,467 + PGA1_c07420 0.67 +0.3 766,467 + PGA1_c07420 0.67 -0.3 766,467 + PGA1_c07420 0.67 +1.0 766,474 - PGA1_c07420 0.68 -0.9 766,475 - PGA1_c07420 0.68 -0.7 766,475 - PGA1_c07420 0.68 -1.0 766,475 - PGA1_c07420 0.68 -0.7 766,475 - PGA1_c07420 0.68 -1.0 766,475 - PGA1_c07420 0.68 +2.0 766,475 - PGA1_c07420 0.68 +0.5 766,515 + PGA1_c07420 0.71 +0.7 766,520 + PGA1_c07420 0.71 -0.1 766,548 + PGA1_c07420 0.73 -0.5 766,595 - PGA1_c07420 0.77 +0.2 766,667 + PGA1_c07420 0.83 -0.3 766,690 + PGA1_c07420 0.85 +0.6 766,762 + +2.0 766,767 + +0.4 766,767 + -0.5 766,768 - +0.5 766,816 + +0.7 766,826 + +0.7 766,826 + -1.2 766,831 + +0.5 766,831 + +0.8 766,834 - -0.5 766,834 - +0.5 766,839 - -0.1 766,839 - -3.1 766,839 - -1.7 766,839 - +0.7 766,839 - -1.2 766,839 - -0.9 766,983 - +1.5 767,000 + -1.6 767,011 + -0.6 767,140 - PGA1_c07430 0.16 -1.6 767,162 + PGA1_c07430 0.19 +0.9 767,292 - PGA1_c07430 0.35 +0.5 767,315 + PGA1_c07430 0.38 -1.2 767,357 - PGA1_c07430 0.43 -0.9 767,412 + PGA1_c07430 0.50 +1.3 767,432 + PGA1_c07430 0.53 -0.6 767,482 + PGA1_c07430 0.59 -2.3 767,533 + PGA1_c07430 0.66 -1.1 767,540 + PGA1_c07430 0.66 +1.3 767,541 - PGA1_c07430 0.67 +1.6 767,559 - PGA1_c07430 0.69 +1.6 767,607 - PGA1_c07430 0.75 +0.6 767,657 - PGA1_c07430 0.81 +0.6 767,756 + -1.2 767,779 + -1.0 767,814 - -0.3 767,841 + +0.9 767,940 - PGA1_c07440 0.11 -3.6 767,988 - PGA1_c07440 0.15 +0.7 768,018 + PGA1_c07440 0.18 +1.4 768,024 + PGA1_c07440 0.19 -3.2 768,083 + PGA1_c07440 0.24 +0.3 768,092 + PGA1_c07440 0.25 +1.7 768,110 - PGA1_c07440 0.27 -0.0 768,221 - PGA1_c07440 0.37 -0.8 768,250 + PGA1_c07440 0.40 +1.5 768,275 + PGA1_c07440 0.42 +1.9 768,275 + PGA1_c07440 0.42 -0.9 768,275 + PGA1_c07440 0.42 +1.3 768,275 + PGA1_c07440 0.42 -1.8 768,275 + PGA1_c07440 0.42 +0.8 768,283 - PGA1_c07440 0.43 -1.3 768,309 - PGA1_c07440 0.46 +0.9 768,314 - PGA1_c07440 0.46 -1.5 768,314 - PGA1_c07440 0.46 +0.4 768,384 + PGA1_c07440 0.53 -3.6 768,395 + PGA1_c07440 0.54 +0.8 768,395 + PGA1_c07440 0.54 +0.6 768,395 + PGA1_c07440 0.54 +1.6 768,403 - PGA1_c07440 0.55 -0.2 768,405 + PGA1_c07440 0.55 +1.1 768,405 + PGA1_c07440 0.55 -0.7 768,405 + PGA1_c07440 0.55 +1.1 768,455 + PGA1_c07440 0.59 +1.7 768,460 + PGA1_c07440 0.60 +0.8 768,463 - PGA1_c07440 0.60 -0.5 768,463 - PGA1_c07440 0.60 -1.2 768,463 - PGA1_c07440 0.60 +1.2 768,465 + PGA1_c07440 0.60 -0.7 768,534 - PGA1_c07440 0.67 -0.0 768,534 - PGA1_c07440 0.67 +0.1 768,554 + PGA1_c07440 0.69 +1.4 768,572 - PGA1_c07440 0.70 -0.2 768,589 + PGA1_c07440 0.72 -1.3 768,715 - PGA1_c07440 0.84 +0.8 768,732 + PGA1_c07440 0.85 +1.4 768,734 + PGA1_c07440 0.86 -0.1 768,790 + +1.0 768,790 + +0.6
Or see this region's nucleotide sequence