Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05520

Experiment: marine broth pH 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05510 and PGA1_c05520 are separated by 48 nucleotidesPGA1_c05520 and PGA1_c05530 are separated by 111 nucleotides PGA1_c05510: PGA1_c05510 - glyceraldehyde-3-phosphate dehydrogenase 1, at 563,224 to 564,285 _c05510 PGA1_c05520: PGA1_c05520 - hypothetical protein, at 564,334 to 564,834 _c05520 PGA1_c05530: PGA1_c05530 - putative allantoin catabolism protein, at 564,946 to 565,938 _c05530 Position (kb) 564 565Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 563.376 kb on + strand, within PGA1_c05510at 563.376 kb on + strand, within PGA1_c05510at 563.381 kb on + strand, within PGA1_c05510at 563.384 kb on - strand, within PGA1_c05510at 563.384 kb on - strand, within PGA1_c05510at 563.410 kb on - strand, within PGA1_c05510at 563.410 kb on - strand, within PGA1_c05510at 563.488 kb on - strand, within PGA1_c05510at 563.649 kb on + strand, within PGA1_c05510at 563.734 kb on - strand, within PGA1_c05510at 563.734 kb on - strand, within PGA1_c05510at 563.735 kb on + strand, within PGA1_c05510at 563.782 kb on - strand, within PGA1_c05510at 563.831 kb on - strand, within PGA1_c05510at 563.860 kb on + strand, within PGA1_c05510at 563.904 kb on + strand, within PGA1_c05510at 563.904 kb on + strand, within PGA1_c05510at 563.958 kb on + strand, within PGA1_c05510at 563.981 kb on - strand, within PGA1_c05510at 563.981 kb on - strand, within PGA1_c05510at 564.026 kb on - strand, within PGA1_c05510at 564.026 kb on - strand, within PGA1_c05510at 564.054 kb on + strand, within PGA1_c05510at 564.062 kb on + strand, within PGA1_c05510at 564.062 kb on - strand, within PGA1_c05510at 564.102 kb on - strand, within PGA1_c05510at 564.163 kb on + strand, within PGA1_c05510at 564.163 kb on + strand, within PGA1_c05510at 564.215 kb on - strandat 564.227 kb on - strandat 564.227 kb on - strandat 564.227 kb on - strandat 564.227 kb on - strandat 564.227 kb on - strandat 564.328 kb on - strandat 564.338 kb on + strandat 564.343 kb on + strandat 564.522 kb on - strand, within PGA1_c05520at 564.600 kb on - strand, within PGA1_c05520at 564.678 kb on - strand, within PGA1_c05520at 564.693 kb on + strand, within PGA1_c05520at 564.712 kb on + strand, within PGA1_c05520at 564.743 kb on + strand, within PGA1_c05520at 564.762 kb on + strand, within PGA1_c05520at 564.807 kb on - strandat 564.850 kb on - strandat 564.850 kb on - strandat 564.850 kb on - strandat 564.850 kb on - strandat 564.850 kb on - strandat 564.865 kb on - strandat 564.893 kb on + strandat 564.900 kb on + strandat 564.901 kb on - strandat 564.939 kb on + strandat 564.947 kb on - strandat 564.947 kb on - strandat 564.947 kb on - strandat 564.947 kb on - strandat 564.947 kb on - strandat 564.961 kb on + strandat 564.974 kb on - strandat 565.007 kb on + strandat 565.153 kb on - strand, within PGA1_c05530at 565.180 kb on - strand, within PGA1_c05530at 565.186 kb on + strand, within PGA1_c05530at 565.396 kb on + strand, within PGA1_c05530at 565.437 kb on + strand, within PGA1_c05530at 565.442 kb on + strand, within PGA1_c05530at 565.449 kb on + strand, within PGA1_c05530at 565.754 kb on - strand, within PGA1_c05530at 565.762 kb on - strand, within PGA1_c05530at 565.821 kb on - strand, within PGA1_c05530at 565.828 kb on + strand, within PGA1_c05530

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth pH 6
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563,376 + PGA1_c05510 0.14 +0.2
563,376 + PGA1_c05510 0.14 +0.6
563,381 + PGA1_c05510 0.15 +0.0
563,384 - PGA1_c05510 0.15 -0.0
563,384 - PGA1_c05510 0.15 +0.1
563,410 - PGA1_c05510 0.18 -0.5
563,410 - PGA1_c05510 0.18 -2.0
563,488 - PGA1_c05510 0.25 -2.9
563,649 + PGA1_c05510 0.40 +1.5
563,734 - PGA1_c05510 0.48 -1.6
563,734 - PGA1_c05510 0.48 -2.0
563,735 + PGA1_c05510 0.48 -1.5
563,782 - PGA1_c05510 0.53 -1.7
563,831 - PGA1_c05510 0.57 -0.7
563,860 + PGA1_c05510 0.60 -2.8
563,904 + PGA1_c05510 0.64 -0.8
563,904 + PGA1_c05510 0.64 -3.4
563,958 + PGA1_c05510 0.69 +0.9
563,981 - PGA1_c05510 0.71 +1.3
563,981 - PGA1_c05510 0.71 -3.9
564,026 - PGA1_c05510 0.76 +0.7
564,026 - PGA1_c05510 0.76 -2.8
564,054 + PGA1_c05510 0.78 -0.6
564,062 + PGA1_c05510 0.79 -0.5
564,062 - PGA1_c05510 0.79 -2.3
564,102 - PGA1_c05510 0.83 -0.8
564,163 + PGA1_c05510 0.88 +0.1
564,163 + PGA1_c05510 0.88 -1.6
564,215 - -2.4
564,227 - -2.8
564,227 - -0.4
564,227 - -0.3
564,227 - +1.5
564,227 - -0.4
564,328 - -1.5
564,338 + -0.2
564,343 + -0.1
564,522 - PGA1_c05520 0.38 -0.2
564,600 - PGA1_c05520 0.53 +1.2
564,678 - PGA1_c05520 0.69 +0.3
564,693 + PGA1_c05520 0.72 +0.7
564,712 + PGA1_c05520 0.75 -0.2
564,743 + PGA1_c05520 0.82 -3.5
564,762 + PGA1_c05520 0.85 +1.6
564,807 - +1.0
564,850 - +0.8
564,850 - +0.2
564,850 - +2.2
564,850 - +2.6
564,850 - -2.2
564,865 - -1.0
564,893 + -2.4
564,900 + +0.8
564,901 - -0.0
564,939 + -0.5
564,947 - +1.2
564,947 - -2.2
564,947 - -3.3
564,947 - -2.9
564,947 - -0.3
564,961 + -0.3
564,974 - -2.0
565,007 + -1.8
565,153 - PGA1_c05530 0.21 -2.4
565,180 - PGA1_c05530 0.24 -3.2
565,186 + PGA1_c05530 0.24 +0.3
565,396 + PGA1_c05530 0.45 -1.1
565,437 + PGA1_c05530 0.49 -0.4
565,442 + PGA1_c05530 0.50 +0.9
565,449 + PGA1_c05530 0.51 +0.8
565,754 - PGA1_c05530 0.81 +0.8
565,762 - PGA1_c05530 0.82 -1.7
565,821 - PGA1_c05530 0.88 +1.3
565,828 + PGA1_c05530 0.89 -0.4

Or see this region's nucleotide sequence