Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05210

Experiment: marine broth pH 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05190 and PGA1_c05200 are separated by 14 nucleotidesPGA1_c05200 and PGA1_c05210 overlap by 1 nucleotidesPGA1_c05210 and PGA1_c05220 are separated by 7 nucleotides PGA1_c05190: PGA1_c05190 - ABC transporter, inner membrane component, at 512,758 to 513,555 _c05190 PGA1_c05200: PGA1_c05200 - putative ABC transporter, inner membrane component, at 513,570 to 514,433 _c05200 PGA1_c05210: PGA1_c05210 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 514,433 to 515,548 _c05210 PGA1_c05220: PGA1_c05220 - putative sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 515,556 to 516,674 _c05220 Position (kb) 514 515 516Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 513.527 kb on - strandat 513.565 kb on - strandat 513.575 kb on - strandat 513.598 kb on + strandat 513.598 kb on + strandat 513.598 kb on + strandat 513.606 kb on + strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.646 kb on - strandat 513.685 kb on - strand, within PGA1_c05200at 513.721 kb on - strand, within PGA1_c05200at 513.746 kb on + strand, within PGA1_c05200at 513.760 kb on + strand, within PGA1_c05200at 513.805 kb on + strand, within PGA1_c05200at 513.822 kb on - strand, within PGA1_c05200at 513.840 kb on + strand, within PGA1_c05200at 513.850 kb on + strand, within PGA1_c05200at 513.851 kb on - strand, within PGA1_c05200at 513.913 kb on - strand, within PGA1_c05200at 513.916 kb on + strand, within PGA1_c05200at 513.979 kb on - strand, within PGA1_c05200at 513.992 kb on + strand, within PGA1_c05200at 513.998 kb on + strand, within PGA1_c05200at 514.054 kb on + strand, within PGA1_c05200at 514.057 kb on - strand, within PGA1_c05200at 514.064 kb on + strand, within PGA1_c05200at 514.064 kb on + strand, within PGA1_c05200at 514.064 kb on + strand, within PGA1_c05200at 514.072 kb on - strand, within PGA1_c05200at 514.072 kb on - strand, within PGA1_c05200at 514.072 kb on - strand, within PGA1_c05200at 514.072 kb on - strand, within PGA1_c05200at 514.127 kb on + strand, within PGA1_c05200at 514.135 kb on - strand, within PGA1_c05200at 514.218 kb on + strand, within PGA1_c05200at 514.218 kb on + strand, within PGA1_c05200at 514.237 kb on - strand, within PGA1_c05200at 514.246 kb on + strand, within PGA1_c05200at 514.274 kb on + strand, within PGA1_c05200at 514.279 kb on + strand, within PGA1_c05200at 514.282 kb on - strand, within PGA1_c05200at 514.284 kb on + strand, within PGA1_c05200at 514.284 kb on + strand, within PGA1_c05200at 514.292 kb on - strand, within PGA1_c05200at 514.292 kb on - strand, within PGA1_c05200at 514.333 kb on + strand, within PGA1_c05200at 514.341 kb on - strand, within PGA1_c05200at 514.397 kb on + strandat 514.404 kb on + strandat 514.405 kb on - strandat 514.449 kb on + strandat 514.455 kb on + strandat 514.463 kb on - strandat 514.544 kb on - strandat 514.548 kb on + strand, within PGA1_c05210at 514.548 kb on + strand, within PGA1_c05210at 514.548 kb on + strand, within PGA1_c05210at 514.548 kb on - strand, within PGA1_c05210at 514.554 kb on + strand, within PGA1_c05210at 514.554 kb on + strand, within PGA1_c05210at 514.562 kb on - strand, within PGA1_c05210at 514.564 kb on + strand, within PGA1_c05210at 514.584 kb on + strand, within PGA1_c05210at 514.584 kb on + strand, within PGA1_c05210at 514.592 kb on - strand, within PGA1_c05210at 514.613 kb on + strand, within PGA1_c05210at 514.621 kb on - strand, within PGA1_c05210at 514.628 kb on - strand, within PGA1_c05210at 514.656 kb on + strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.720 kb on - strand, within PGA1_c05210at 514.758 kb on - strand, within PGA1_c05210at 514.770 kb on + strand, within PGA1_c05210at 514.770 kb on + strand, within PGA1_c05210at 514.775 kb on + strand, within PGA1_c05210at 514.778 kb on - strand, within PGA1_c05210at 514.800 kb on - strand, within PGA1_c05210at 514.850 kb on + strand, within PGA1_c05210at 514.857 kb on + strand, within PGA1_c05210at 514.891 kb on - strand, within PGA1_c05210at 514.931 kb on + strand, within PGA1_c05210at 514.962 kb on - strand, within PGA1_c05210at 514.974 kb on + strand, within PGA1_c05210at 515.029 kb on - strand, within PGA1_c05210at 515.069 kb on + strand, within PGA1_c05210at 515.195 kb on + strand, within PGA1_c05210at 515.197 kb on + strand, within PGA1_c05210at 515.203 kb on - strand, within PGA1_c05210at 515.223 kb on + strand, within PGA1_c05210at 515.226 kb on - strand, within PGA1_c05210at 515.231 kb on - strand, within PGA1_c05210at 515.277 kb on + strand, within PGA1_c05210at 515.301 kb on + strand, within PGA1_c05210at 515.301 kb on + strand, within PGA1_c05210at 515.309 kb on - strand, within PGA1_c05210at 515.309 kb on - strand, within PGA1_c05210at 515.311 kb on + strand, within PGA1_c05210at 515.398 kb on - strand, within PGA1_c05210at 515.431 kb on + strand, within PGA1_c05210at 515.445 kb on + strandat 515.446 kb on + strandat 515.499 kb on - strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.506 kb on + strandat 515.514 kb on - strandat 515.514 kb on - strandat 515.514 kb on - strandat 515.516 kb on + strandat 515.533 kb on + strandat 515.554 kb on - strandat 515.614 kb on + strandat 515.633 kb on + strandat 515.642 kb on + strandat 515.719 kb on + strand, within PGA1_c05220at 515.729 kb on + strand, within PGA1_c05220at 515.729 kb on + strand, within PGA1_c05220at 515.747 kb on + strand, within PGA1_c05220at 515.750 kb on - strand, within PGA1_c05220at 515.800 kb on + strand, within PGA1_c05220at 515.862 kb on + strand, within PGA1_c05220at 515.870 kb on - strand, within PGA1_c05220at 515.882 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.887 kb on + strand, within PGA1_c05220at 515.895 kb on - strand, within PGA1_c05220at 515.895 kb on - strand, within PGA1_c05220at 515.948 kb on + strand, within PGA1_c05220at 515.953 kb on + strand, within PGA1_c05220at 515.956 kb on - strand, within PGA1_c05220at 516.004 kb on + strand, within PGA1_c05220at 516.010 kb on + strand, within PGA1_c05220at 516.018 kb on - strand, within PGA1_c05220at 516.039 kb on - strand, within PGA1_c05220at 516.077 kb on + strand, within PGA1_c05220at 516.204 kb on - strand, within PGA1_c05220at 516.209 kb on - strand, within PGA1_c05220at 516.209 kb on - strand, within PGA1_c05220at 516.219 kb on + strand, within PGA1_c05220at 516.219 kb on + strand, within PGA1_c05220at 516.257 kb on + strand, within PGA1_c05220at 516.372 kb on - strand, within PGA1_c05220at 516.431 kb on + strand, within PGA1_c05220at 516.441 kb on - strand, within PGA1_c05220

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth pH 6
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513,527 - +0.4
513,565 - -0.0
513,575 - -0.5
513,598 + +0.5
513,598 + -3.2
513,598 + -0.2
513,606 + +0.7
513,606 - -0.2
513,606 - -3.1
513,606 - -0.2
513,606 - -1.8
513,606 - +1.0
513,606 - +1.4
513,646 - -3.2
513,685 - PGA1_c05200 0.13 -2.0
513,721 - PGA1_c05200 0.17 -1.4
513,746 + PGA1_c05200 0.20 -1.8
513,760 + PGA1_c05200 0.22 -0.8
513,805 + PGA1_c05200 0.27 -1.5
513,822 - PGA1_c05200 0.29 +0.9
513,840 + PGA1_c05200 0.31 -2.8
513,850 + PGA1_c05200 0.32 -0.7
513,851 - PGA1_c05200 0.33 -0.8
513,913 - PGA1_c05200 0.40 -0.8
513,916 + PGA1_c05200 0.40 -0.3
513,979 - PGA1_c05200 0.47 +0.1
513,992 + PGA1_c05200 0.49 +1.2
513,998 + PGA1_c05200 0.50 -1.0
514,054 + PGA1_c05200 0.56 -2.0
514,057 - PGA1_c05200 0.56 +2.0
514,064 + PGA1_c05200 0.57 -1.5
514,064 + PGA1_c05200 0.57 -1.3
514,064 + PGA1_c05200 0.57 -0.9
514,072 - PGA1_c05200 0.58 -0.3
514,072 - PGA1_c05200 0.58 -1.5
514,072 - PGA1_c05200 0.58 -1.4
514,072 - PGA1_c05200 0.58 -1.3
514,127 + PGA1_c05200 0.64 -0.4
514,135 - PGA1_c05200 0.65 +0.3
514,218 + PGA1_c05200 0.75 -0.2
514,218 + PGA1_c05200 0.75 -3.2
514,237 - PGA1_c05200 0.77 +0.8
514,246 + PGA1_c05200 0.78 -0.6
514,274 + PGA1_c05200 0.81 +0.2
514,279 + PGA1_c05200 0.82 -1.0
514,282 - PGA1_c05200 0.82 +0.6
514,284 + PGA1_c05200 0.83 +1.2
514,284 + PGA1_c05200 0.83 +2.1
514,292 - PGA1_c05200 0.84 -0.8
514,292 - PGA1_c05200 0.84 -0.5
514,333 + PGA1_c05200 0.88 -0.5
514,341 - PGA1_c05200 0.89 -0.2
514,397 + +2.1
514,404 + -0.5
514,405 - -0.4
514,449 + +1.8
514,455 + -0.4
514,463 - -2.9
514,544 - +0.5
514,548 + PGA1_c05210 0.10 +0.5
514,548 + PGA1_c05210 0.10 -1.4
514,548 + PGA1_c05210 0.10 +0.1
514,548 - PGA1_c05210 0.10 +0.1
514,554 + PGA1_c05210 0.11 -0.5
514,554 + PGA1_c05210 0.11 -1.5
514,562 - PGA1_c05210 0.12 -0.8
514,564 + PGA1_c05210 0.12 -3.6
514,584 + PGA1_c05210 0.14 -1.2
514,584 + PGA1_c05210 0.14 -1.0
514,592 - PGA1_c05210 0.14 +0.2
514,613 + PGA1_c05210 0.16 +1.1
514,621 - PGA1_c05210 0.17 +0.1
514,628 - PGA1_c05210 0.17 -0.2
514,656 + PGA1_c05210 0.20 +0.4
514,720 - PGA1_c05210 0.26 -0.1
514,720 - PGA1_c05210 0.26 -2.0
514,720 - PGA1_c05210 0.26 +0.8
514,758 - PGA1_c05210 0.29 -0.1
514,770 + PGA1_c05210 0.30 -2.4
514,770 + PGA1_c05210 0.30 +0.3
514,775 + PGA1_c05210 0.31 -4.1
514,778 - PGA1_c05210 0.31 -2.4
514,800 - PGA1_c05210 0.33 +1.5
514,850 + PGA1_c05210 0.37 +0.8
514,857 + PGA1_c05210 0.38 -1.4
514,891 - PGA1_c05210 0.41 -1.3
514,931 + PGA1_c05210 0.45 +1.1
514,962 - PGA1_c05210 0.47 -0.7
514,974 + PGA1_c05210 0.48 -0.5
515,029 - PGA1_c05210 0.53 -0.0
515,069 + PGA1_c05210 0.57 -0.3
515,195 + PGA1_c05210 0.68 -0.6
515,197 + PGA1_c05210 0.68 -1.2
515,203 - PGA1_c05210 0.69 +0.2
515,223 + PGA1_c05210 0.71 +0.8
515,226 - PGA1_c05210 0.71 -0.2
515,231 - PGA1_c05210 0.72 -0.7
515,277 + PGA1_c05210 0.76 +0.6
515,301 + PGA1_c05210 0.78 +0.8
515,301 + PGA1_c05210 0.78 -0.2
515,309 - PGA1_c05210 0.78 -2.4
515,309 - PGA1_c05210 0.78 -2.2
515,311 + PGA1_c05210 0.79 -0.3
515,398 - PGA1_c05210 0.86 +0.4
515,431 + PGA1_c05210 0.89 +0.4
515,445 + +0.5
515,446 + +1.8
515,499 - -2.4
515,506 + -0.8
515,506 + +0.2
515,506 + +1.1
515,506 + -1.2
515,506 + -1.0
515,506 + +1.9
515,506 + +0.2
515,506 + +0.2
515,514 - -0.8
515,514 - -2.9
515,514 - -0.5
515,516 + -0.6
515,533 + -1.2
515,554 - -0.8
515,614 + -2.1
515,633 + -0.2
515,642 + -2.8
515,719 + PGA1_c05220 0.15 +0.0
515,729 + PGA1_c05220 0.15 -0.2
515,729 + PGA1_c05220 0.15 +0.4
515,747 + PGA1_c05220 0.17 -1.8
515,750 - PGA1_c05220 0.17 -0.8
515,800 + PGA1_c05220 0.22 -1.0
515,862 + PGA1_c05220 0.27 -0.1
515,870 - PGA1_c05220 0.28 +0.4
515,882 + PGA1_c05220 0.29 +0.2
515,887 + PGA1_c05220 0.30 +0.5
515,887 + PGA1_c05220 0.30 +0.6
515,887 + PGA1_c05220 0.30 +0.1
515,887 + PGA1_c05220 0.30 +0.4
515,887 + PGA1_c05220 0.30 +1.7
515,887 + PGA1_c05220 0.30 -0.3
515,895 - PGA1_c05220 0.30 +0.5
515,895 - PGA1_c05220 0.30 -1.4
515,948 + PGA1_c05220 0.35 +0.5
515,953 + PGA1_c05220 0.35 -0.4
515,956 - PGA1_c05220 0.36 -1.7
516,004 + PGA1_c05220 0.40 +0.3
516,010 + PGA1_c05220 0.41 -1.8
516,018 - PGA1_c05220 0.41 -1.0
516,039 - PGA1_c05220 0.43 +0.0
516,077 + PGA1_c05220 0.47 -3.1
516,204 - PGA1_c05220 0.58 -1.5
516,209 - PGA1_c05220 0.58 +0.1
516,209 - PGA1_c05220 0.58 -1.5
516,219 + PGA1_c05220 0.59 +1.5
516,219 + PGA1_c05220 0.59 -0.2
516,257 + PGA1_c05220 0.63 -2.2
516,372 - PGA1_c05220 0.73 +1.0
516,431 + PGA1_c05220 0.78 -0.9
516,441 - PGA1_c05220 0.79 -1.3

Or see this region's nucleotide sequence