Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05160 and PGA1_c05170 overlap by 11 nucleotides PGA1_c05170 and PGA1_c05180 are separated by 156 nucleotides PGA1_c05180 and PGA1_c05190 overlap by 1 nucleotides PGA1_c05190 and PGA1_c05200 are separated by 14 nucleotides PGA1_c05200 and PGA1_c05210 overlap by 1 nucleotides
PGA1_c05160: PGA1_c05160 - peptidase M56-like protein, at 510,787 to 511,938
_c05160
PGA1_c05170: PGA1_c05170 - penicillinase repressor blaI/mecI-like protein, at 511,928 to 512,323
_c05170
PGA1_c05180: PGA1_c05180 - Predicted small integral membrane protein, at 512,480 to 512,758
_c05180
PGA1_c05190: PGA1_c05190 - ABC transporter, inner membrane component, at 512,758 to 513,555
_c05190
PGA1_c05200: PGA1_c05200 - putative ABC transporter, inner membrane component, at 513,570 to 514,433
_c05200
PGA1_c05210: PGA1_c05210 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 514,433 to 515,548
_c05210
Position (kb) 512
513
514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 511.772 kb on - strand, within PGA1_c05160 at 511.822 kb on - strand, within PGA1_c05160 at 511.897 kb on + strand at 511.913 kb on - strand at 512.040 kb on + strand, within PGA1_c05170 at 512.040 kb on + strand, within PGA1_c05170 at 512.042 kb on + strand, within PGA1_c05170 at 512.071 kb on - strand, within PGA1_c05170 at 512.099 kb on - strand, within PGA1_c05170 at 512.104 kb on - strand, within PGA1_c05170 at 512.104 kb on - strand, within PGA1_c05170 at 512.280 kb on + strand, within PGA1_c05170 at 512.292 kb on + strand at 512.306 kb on + strand at 512.332 kb on + strand at 512.340 kb on - strand at 512.354 kb on - strand at 512.354 kb on - strand at 512.355 kb on - strand at 512.355 kb on - strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.357 kb on + strand at 512.365 kb on - strand at 512.365 kb on - strand at 512.365 kb on - strand at 512.367 kb on - strand at 512.400 kb on + strand at 512.400 kb on + strand at 512.408 kb on - strand at 512.420 kb on + strand at 512.430 kb on + strand at 512.430 kb on + strand at 512.443 kb on - strand at 512.457 kb on - strand at 512.467 kb on + strand at 512.554 kb on + strand, within PGA1_c05180 at 512.562 kb on - strand, within PGA1_c05180 at 512.562 kb on - strand, within PGA1_c05180 at 512.562 kb on - strand, within PGA1_c05180 at 512.591 kb on - strand, within PGA1_c05180 at 512.648 kb on - strand, within PGA1_c05180 at 512.725 kb on - strand, within PGA1_c05180 at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.735 kb on + strand at 512.736 kb on + strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.743 kb on - strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.755 kb on + strand at 512.865 kb on + strand, within PGA1_c05190 at 512.873 kb on - strand, within PGA1_c05190 at 512.901 kb on - strand, within PGA1_c05190 at 512.936 kb on + strand, within PGA1_c05190 at 512.944 kb on - strand, within PGA1_c05190 at 512.944 kb on - strand, within PGA1_c05190 at 512.963 kb on - strand, within PGA1_c05190 at 512.997 kb on + strand, within PGA1_c05190 at 512.997 kb on + strand, within PGA1_c05190 at 512.997 kb on + strand, within PGA1_c05190 at 513.002 kb on + strand, within PGA1_c05190 at 513.002 kb on + strand, within PGA1_c05190 at 513.010 kb on - strand, within PGA1_c05190 at 513.046 kb on + strand, within PGA1_c05190 at 513.054 kb on - strand, within PGA1_c05190 at 513.054 kb on - strand, within PGA1_c05190 at 513.068 kb on + strand, within PGA1_c05190 at 513.121 kb on - strand, within PGA1_c05190 at 513.166 kb on - strand, within PGA1_c05190 at 513.170 kb on + strand, within PGA1_c05190 at 513.172 kb on + strand, within PGA1_c05190 at 513.178 kb on - strand, within PGA1_c05190 at 513.239 kb on + strand, within PGA1_c05190 at 513.249 kb on + strand, within PGA1_c05190 at 513.291 kb on - strand, within PGA1_c05190 at 513.315 kb on + strand, within PGA1_c05190 at 513.315 kb on + strand, within PGA1_c05190 at 513.402 kb on - strand, within PGA1_c05190 at 513.420 kb on + strand, within PGA1_c05190 at 513.428 kb on - strand, within PGA1_c05190 at 513.428 kb on - strand, within PGA1_c05190 at 513.527 kb on - strand at 513.565 kb on - strand at 513.575 kb on - strand at 513.598 kb on + strand at 513.598 kb on + strand at 513.598 kb on + strand at 513.606 kb on + strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.606 kb on - strand at 513.646 kb on - strand at 513.685 kb on - strand, within PGA1_c05200 at 513.721 kb on - strand, within PGA1_c05200 at 513.746 kb on + strand, within PGA1_c05200 at 513.760 kb on + strand, within PGA1_c05200 at 513.805 kb on + strand, within PGA1_c05200 at 513.822 kb on - strand, within PGA1_c05200 at 513.840 kb on + strand, within PGA1_c05200 at 513.850 kb on + strand, within PGA1_c05200 at 513.851 kb on - strand, within PGA1_c05200 at 513.913 kb on - strand, within PGA1_c05200 at 513.916 kb on + strand, within PGA1_c05200 at 513.979 kb on - strand, within PGA1_c05200 at 513.992 kb on + strand, within PGA1_c05200 at 513.998 kb on + strand, within PGA1_c05200 at 514.054 kb on + strand, within PGA1_c05200 at 514.057 kb on - strand, within PGA1_c05200 at 514.064 kb on + strand, within PGA1_c05200 at 514.064 kb on + strand, within PGA1_c05200 at 514.064 kb on + strand, within PGA1_c05200 at 514.072 kb on - strand, within PGA1_c05200 at 514.072 kb on - strand, within PGA1_c05200 at 514.072 kb on - strand, within PGA1_c05200 at 514.072 kb on - strand, within PGA1_c05200 at 514.127 kb on + strand, within PGA1_c05200 at 514.135 kb on - strand, within PGA1_c05200 at 514.218 kb on + strand, within PGA1_c05200 at 514.218 kb on + strand, within PGA1_c05200 at 514.237 kb on - strand, within PGA1_c05200 at 514.246 kb on + strand, within PGA1_c05200 at 514.274 kb on + strand, within PGA1_c05200 at 514.279 kb on + strand, within PGA1_c05200 at 514.282 kb on - strand, within PGA1_c05200 at 514.284 kb on + strand, within PGA1_c05200 at 514.284 kb on + strand, within PGA1_c05200 at 514.292 kb on - strand, within PGA1_c05200 at 514.292 kb on - strand, within PGA1_c05200 at 514.333 kb on + strand, within PGA1_c05200 at 514.341 kb on - strand, within PGA1_c05200 at 514.397 kb on + strand at 514.404 kb on + strand at 514.405 kb on - strand at 514.449 kb on + strand at 514.455 kb on + strand at 514.463 kb on - strand at 514.544 kb on - strand at 514.548 kb on + strand, within PGA1_c05210 at 514.548 kb on + strand, within PGA1_c05210 at 514.548 kb on + strand, within PGA1_c05210 at 514.548 kb on - strand, within PGA1_c05210 at 514.554 kb on + strand, within PGA1_c05210 at 514.554 kb on + strand, within PGA1_c05210
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 511,772 - PGA1_c05160 0.86 -0.9 511,822 - PGA1_c05160 0.90 +1.0 511,897 + -2.2 511,913 - +1.0 512,040 + PGA1_c05170 0.28 -2.0 512,040 + PGA1_c05170 0.28 -0.6 512,042 + PGA1_c05170 0.29 -2.4 512,071 - PGA1_c05170 0.36 -2.9 512,099 - PGA1_c05170 0.43 -1.5 512,104 - PGA1_c05170 0.44 -1.9 512,104 - PGA1_c05170 0.44 -2.9 512,280 + PGA1_c05170 0.89 -1.5 512,292 + +0.6 512,306 + -0.9 512,332 + -2.4 512,340 - -0.9 512,354 - -2.4 512,354 - -1.1 512,355 - +0.8 512,355 - -1.4 512,357 + -3.0 512,357 + +0.3 512,357 + -0.5 512,357 + -0.8 512,357 + -0.3 512,357 + -1.4 512,357 + +0.3 512,357 + -2.8 512,365 - -1.5 512,365 - -2.5 512,365 - +0.4 512,367 - -2.2 512,400 + +0.8 512,400 + +1.3 512,408 - +0.7 512,420 + +1.5 512,430 + +0.6 512,430 + +1.5 512,443 - +0.7 512,457 - -0.1 512,467 + -0.4 512,554 + PGA1_c05180 0.27 +0.5 512,562 - PGA1_c05180 0.29 -1.3 512,562 - PGA1_c05180 0.29 -0.6 512,562 - PGA1_c05180 0.29 -1.3 512,591 - PGA1_c05180 0.40 -1.8 512,648 - PGA1_c05180 0.60 -1.5 512,725 - PGA1_c05180 0.88 -1.8 512,735 + +0.7 512,735 + -1.2 512,735 + -0.7 512,735 + +0.0 512,735 + +0.9 512,735 + -1.3 512,735 + +1.2 512,735 + +2.0 512,735 + -0.5 512,735 + -1.2 512,736 + +0.6 512,743 - -0.8 512,743 - -0.1 512,743 - -0.6 512,743 - +0.3 512,743 - -0.0 512,743 - +0.5 512,743 - -1.5 512,755 + -1.5 512,755 + +2.8 512,755 + -0.1 512,755 + -0.0 512,755 + -2.2 512,865 + PGA1_c05190 0.13 +2.3 512,873 - PGA1_c05190 0.14 -0.2 512,901 - PGA1_c05190 0.18 -0.8 512,936 + PGA1_c05190 0.22 -0.8 512,944 - PGA1_c05190 0.23 -2.8 512,944 - PGA1_c05190 0.23 -0.5 512,963 - PGA1_c05190 0.26 +1.1 512,997 + PGA1_c05190 0.30 +0.3 512,997 + PGA1_c05190 0.30 -0.6 512,997 + PGA1_c05190 0.30 +0.4 513,002 + PGA1_c05190 0.31 +0.2 513,002 + PGA1_c05190 0.31 -0.5 513,010 - PGA1_c05190 0.32 -2.9 513,046 + PGA1_c05190 0.36 -0.7 513,054 - PGA1_c05190 0.37 +1.7 513,054 - PGA1_c05190 0.37 +1.5 513,068 + PGA1_c05190 0.39 +0.3 513,121 - PGA1_c05190 0.45 -0.1 513,166 - PGA1_c05190 0.51 -0.2 513,170 + PGA1_c05190 0.52 -0.5 513,172 + PGA1_c05190 0.52 -2.4 513,178 - PGA1_c05190 0.53 -2.4 513,239 + PGA1_c05190 0.60 -1.8 513,249 + PGA1_c05190 0.62 +1.1 513,291 - PGA1_c05190 0.67 -1.4 513,315 + PGA1_c05190 0.70 -0.9 513,315 + PGA1_c05190 0.70 +0.2 513,402 - PGA1_c05190 0.81 +1.3 513,420 + PGA1_c05190 0.83 +1.0 513,428 - PGA1_c05190 0.84 +1.5 513,428 - PGA1_c05190 0.84 -3.0 513,527 - +0.4 513,565 - -0.0 513,575 - -0.5 513,598 + +0.5 513,598 + -3.2 513,598 + -0.2 513,606 + +0.7 513,606 - -0.2 513,606 - -3.1 513,606 - -0.2 513,606 - -1.8 513,606 - +1.0 513,606 - +1.4 513,646 - -3.2 513,685 - PGA1_c05200 0.13 -2.0 513,721 - PGA1_c05200 0.17 -1.4 513,746 + PGA1_c05200 0.20 -1.8 513,760 + PGA1_c05200 0.22 -0.8 513,805 + PGA1_c05200 0.27 -1.5 513,822 - PGA1_c05200 0.29 +0.9 513,840 + PGA1_c05200 0.31 -2.8 513,850 + PGA1_c05200 0.32 -0.7 513,851 - PGA1_c05200 0.33 -0.8 513,913 - PGA1_c05200 0.40 -0.8 513,916 + PGA1_c05200 0.40 -0.3 513,979 - PGA1_c05200 0.47 +0.1 513,992 + PGA1_c05200 0.49 +1.2 513,998 + PGA1_c05200 0.50 -1.0 514,054 + PGA1_c05200 0.56 -2.0 514,057 - PGA1_c05200 0.56 +2.0 514,064 + PGA1_c05200 0.57 -1.5 514,064 + PGA1_c05200 0.57 -1.3 514,064 + PGA1_c05200 0.57 -0.9 514,072 - PGA1_c05200 0.58 -0.3 514,072 - PGA1_c05200 0.58 -1.5 514,072 - PGA1_c05200 0.58 -1.4 514,072 - PGA1_c05200 0.58 -1.3 514,127 + PGA1_c05200 0.64 -0.4 514,135 - PGA1_c05200 0.65 +0.3 514,218 + PGA1_c05200 0.75 -0.2 514,218 + PGA1_c05200 0.75 -3.2 514,237 - PGA1_c05200 0.77 +0.8 514,246 + PGA1_c05200 0.78 -0.6 514,274 + PGA1_c05200 0.81 +0.2 514,279 + PGA1_c05200 0.82 -1.0 514,282 - PGA1_c05200 0.82 +0.6 514,284 + PGA1_c05200 0.83 +1.2 514,284 + PGA1_c05200 0.83 +2.1 514,292 - PGA1_c05200 0.84 -0.8 514,292 - PGA1_c05200 0.84 -0.5 514,333 + PGA1_c05200 0.88 -0.5 514,341 - PGA1_c05200 0.89 -0.2 514,397 + +2.1 514,404 + -0.5 514,405 - -0.4 514,449 + +1.8 514,455 + -0.4 514,463 - -2.9 514,544 - +0.5 514,548 + PGA1_c05210 0.10 +0.5 514,548 + PGA1_c05210 0.10 -1.4 514,548 + PGA1_c05210 0.10 +0.1 514,548 - PGA1_c05210 0.10 +0.1 514,554 + PGA1_c05210 0.11 -0.5 514,554 + PGA1_c05210 0.11 -1.5
Or see this region's nucleotide sequence