Experiment: marine broth pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04590 and PGA1_c04600 overlap by 4 nucleotides PGA1_c04600 and PGA1_c04610 are separated by 181 nucleotides PGA1_c04610 and PGA1_c04620 are separated by 187 nucleotides PGA1_c04620 and PGA1_c04630 are separated by 83 nucleotides
PGA1_c04590: PGA1_c04590 - putative threonine dehydratase, at 452,579 to 453,553
_c04590
PGA1_c04600: PGA1_c04600 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 453,550 to 454,239
_c04600
PGA1_c04610: PGA1_c04610 - haloacid dehalogenase, type II, at 454,421 to 455,107
_c04610
PGA1_c04620: PGA1_c04620 - peptidyl-prolyl cis-trans isomerase, FKBP-type, at 455,295 to 455,723
_c04620
PGA1_c04630: PGA1_c04630 - 2-nitropropane dioxygenase, at 455,807 to 456,901
_c04630
Position (kb) 454
455
456 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 453.432 kb on + strand, within PGA1_c04590 at 453.432 kb on + strand, within PGA1_c04590 at 453.432 kb on + strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.440 kb on - strand, within PGA1_c04590 at 453.518 kb on + strand at 453.518 kb on + strand at 453.518 kb on + strand at 453.576 kb on + strand at 453.585 kb on + strand at 453.590 kb on + strand at 453.591 kb on + strand at 453.625 kb on + strand, within PGA1_c04600 at 453.634 kb on + strand, within PGA1_c04600 at 453.699 kb on - strand, within PGA1_c04600 at 453.699 kb on - strand, within PGA1_c04600 at 453.813 kb on - strand, within PGA1_c04600 at 453.823 kb on + strand, within PGA1_c04600 at 453.828 kb on + strand, within PGA1_c04600 at 453.942 kb on + strand, within PGA1_c04600 at 453.980 kb on + strand, within PGA1_c04600 at 454.081 kb on + strand, within PGA1_c04600 at 454.156 kb on - strand, within PGA1_c04600 at 454.165 kb on + strand, within PGA1_c04600 at 454.170 kb on + strand, within PGA1_c04600 at 454.208 kb on - strand at 454.208 kb on - strand at 454.220 kb on + strand at 454.291 kb on + strand at 454.358 kb on - strand at 454.362 kb on + strand at 454.370 kb on - strand at 454.371 kb on + strand at 454.371 kb on + strand at 454.381 kb on + strand at 454.381 kb on + strand at 454.389 kb on - strand at 454.413 kb on + strand at 454.421 kb on - strand at 454.421 kb on - strand at 454.451 kb on - strand at 454.451 kb on - strand at 454.456 kb on - strand at 454.457 kb on + strand at 454.463 kb on + strand at 454.484 kb on - strand at 454.622 kb on + strand, within PGA1_c04610 at 454.628 kb on + strand, within PGA1_c04610 at 454.630 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.631 kb on - strand, within PGA1_c04610 at 454.716 kb on + strand, within PGA1_c04610 at 454.747 kb on + strand, within PGA1_c04610 at 454.752 kb on + strand, within PGA1_c04610 at 454.755 kb on - strand, within PGA1_c04610 at 454.755 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.765 kb on - strand, within PGA1_c04610 at 454.770 kb on + strand, within PGA1_c04610 at 454.806 kb on - strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.808 kb on + strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.816 kb on - strand, within PGA1_c04610 at 454.857 kb on - strand, within PGA1_c04610 at 454.887 kb on - strand, within PGA1_c04610 at 454.897 kb on - strand, within PGA1_c04610 at 454.897 kb on - strand, within PGA1_c04610 at 454.929 kb on + strand, within PGA1_c04610 at 454.934 kb on + strand, within PGA1_c04610 at 454.942 kb on + strand, within PGA1_c04610 at 454.963 kb on - strand, within PGA1_c04610 at 454.982 kb on - strand, within PGA1_c04610 at 454.988 kb on - strand, within PGA1_c04610 at 455.011 kb on + strand, within PGA1_c04610 at 455.087 kb on + strand at 455.112 kb on - strand at 455.135 kb on - strand at 455.144 kb on - strand at 455.207 kb on + strand at 455.215 kb on - strand at 455.215 kb on - strand at 455.215 kb on - strand at 455.246 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.247 kb on + strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.255 kb on - strand at 455.257 kb on - strand at 455.257 kb on - strand at 455.283 kb on + strand at 455.300 kb on - strand at 455.338 kb on - strand, within PGA1_c04620 at 455.369 kb on - strand, within PGA1_c04620 at 455.371 kb on + strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.379 kb on - strand, within PGA1_c04620 at 455.498 kb on - strand, within PGA1_c04620 at 455.498 kb on - strand, within PGA1_c04620 at 455.523 kb on + strand, within PGA1_c04620 at 455.641 kb on + strand, within PGA1_c04620 at 455.653 kb on + strand, within PGA1_c04620 at 455.655 kb on - strand, within PGA1_c04620 at 455.661 kb on - strand, within PGA1_c04620 at 455.661 kb on - strand, within PGA1_c04620 at 455.722 kb on - strand at 455.727 kb on - strand at 455.735 kb on - strand at 455.741 kb on - strand at 455.745 kb on - strand at 455.750 kb on - strand at 455.792 kb on + strand at 455.849 kb on + strand at 455.857 kb on - strand at 455.857 kb on - strand at 455.857 kb on - strand at 455.939 kb on - strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.961 kb on + strand, within PGA1_c04630 at 455.999 kb on + strand, within PGA1_c04630 at 456.016 kb on - strand, within PGA1_c04630 at 456.029 kb on - strand, within PGA1_c04630 at 456.060 kb on - strand, within PGA1_c04630 at 456.078 kb on + strand, within PGA1_c04630 at 456.096 kb on - strand, within PGA1_c04630 at 456.099 kb on + strand, within PGA1_c04630 at 456.107 kb on - strand, within PGA1_c04630 at 456.107 kb on - strand, within PGA1_c04630
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth pH 6 remove 453,432 + PGA1_c04590 0.87 +0.3 453,432 + PGA1_c04590 0.87 +0.1 453,432 + PGA1_c04590 0.87 +2.8 453,440 - PGA1_c04590 0.88 -0.9 453,440 - PGA1_c04590 0.88 +0.8 453,440 - PGA1_c04590 0.88 -0.8 453,440 - PGA1_c04590 0.88 -0.7 453,440 - PGA1_c04590 0.88 +0.6 453,518 + +0.1 453,518 + -0.6 453,518 + -0.6 453,576 + +1.2 453,585 + +1.1 453,590 + -1.2 453,591 + +0.0 453,625 + PGA1_c04600 0.11 +0.2 453,634 + PGA1_c04600 0.12 -2.2 453,699 - PGA1_c04600 0.22 +0.4 453,699 - PGA1_c04600 0.22 -1.9 453,813 - PGA1_c04600 0.38 +0.6 453,823 + PGA1_c04600 0.40 +4.6 453,828 + PGA1_c04600 0.40 -1.0 453,942 + PGA1_c04600 0.57 -1.7 453,980 + PGA1_c04600 0.62 +1.3 454,081 + PGA1_c04600 0.77 -0.2 454,156 - PGA1_c04600 0.88 -1.7 454,165 + PGA1_c04600 0.89 -2.1 454,170 + PGA1_c04600 0.90 +1.3 454,208 - -0.5 454,208 - -2.6 454,220 + +0.1 454,291 + +0.4 454,358 - -0.2 454,362 + +1.2 454,370 - -1.0 454,371 + -3.1 454,371 + -1.2 454,381 + +0.2 454,381 + +1.1 454,389 - +1.6 454,413 + +1.0 454,421 - +1.6 454,421 - +0.5 454,451 - +0.1 454,451 - -1.9 454,456 - -0.8 454,457 + -1.9 454,463 + -1.5 454,484 - -1.2 454,622 + PGA1_c04610 0.29 -0.7 454,628 + PGA1_c04610 0.30 -2.0 454,630 - PGA1_c04610 0.30 +0.6 454,631 - PGA1_c04610 0.31 -0.7 454,631 - PGA1_c04610 0.31 -0.7 454,631 - PGA1_c04610 0.31 -0.2 454,716 + PGA1_c04610 0.43 +0.0 454,747 + PGA1_c04610 0.47 -2.2 454,752 + PGA1_c04610 0.48 -1.8 454,755 - PGA1_c04610 0.49 +1.0 454,755 - PGA1_c04610 0.49 -2.3 454,765 - PGA1_c04610 0.50 +1.4 454,765 - PGA1_c04610 0.50 -2.6 454,765 - PGA1_c04610 0.50 -0.1 454,770 + PGA1_c04610 0.51 -0.9 454,806 - PGA1_c04610 0.56 -0.2 454,808 + PGA1_c04610 0.56 -1.0 454,808 + PGA1_c04610 0.56 +0.6 454,808 + PGA1_c04610 0.56 -1.0 454,808 + PGA1_c04610 0.56 -1.3 454,816 - PGA1_c04610 0.57 -1.6 454,816 - PGA1_c04610 0.57 -1.0 454,816 - PGA1_c04610 0.57 -1.6 454,816 - PGA1_c04610 0.57 -1.7 454,816 - PGA1_c04610 0.57 -0.0 454,816 - PGA1_c04610 0.57 -0.7 454,857 - PGA1_c04610 0.63 +0.2 454,887 - PGA1_c04610 0.68 -0.2 454,897 - PGA1_c04610 0.69 -0.7 454,897 - PGA1_c04610 0.69 +1.5 454,929 + PGA1_c04610 0.74 +0.2 454,934 + PGA1_c04610 0.75 +1.6 454,942 + PGA1_c04610 0.76 -2.4 454,963 - PGA1_c04610 0.79 -0.7 454,982 - PGA1_c04610 0.82 +0.3 454,988 - PGA1_c04610 0.83 +0.6 455,011 + PGA1_c04610 0.86 +0.8 455,087 + +0.6 455,112 - +0.4 455,135 - -0.0 455,144 - +1.1 455,207 + +0.2 455,215 - -0.5 455,215 - +1.7 455,215 - +0.2 455,246 + -1.5 455,247 + -2.9 455,247 + -0.6 455,247 + -0.7 455,247 + -0.2 455,247 + -0.8 455,247 + +0.6 455,247 + +0.1 455,247 + +1.5 455,247 + -0.3 455,247 + -0.3 455,247 + -0.6 455,247 + -2.0 455,247 + -0.2 455,247 + -0.2 455,247 + -1.3 455,255 - -0.3 455,255 - +0.9 455,255 - -1.6 455,255 - +0.1 455,255 - +0.9 455,255 - +0.1 455,255 - +0.8 455,255 - -1.2 455,257 - -2.1 455,257 - +0.3 455,283 + -1.1 455,300 - -2.5 455,338 - PGA1_c04620 0.10 +0.0 455,369 - PGA1_c04620 0.17 +0.3 455,371 + PGA1_c04620 0.18 -0.5 455,379 - PGA1_c04620 0.20 +0.8 455,379 - PGA1_c04620 0.20 +0.0 455,379 - PGA1_c04620 0.20 +1.0 455,498 - PGA1_c04620 0.47 +1.1 455,498 - PGA1_c04620 0.47 -0.6 455,523 + PGA1_c04620 0.53 +1.3 455,641 + PGA1_c04620 0.81 +0.8 455,653 + PGA1_c04620 0.83 -2.2 455,655 - PGA1_c04620 0.84 +0.7 455,661 - PGA1_c04620 0.85 -0.3 455,661 - PGA1_c04620 0.85 -0.2 455,722 - -0.5 455,727 - +0.3 455,735 - +1.0 455,741 - -0.2 455,745 - -0.1 455,750 - +0.2 455,792 + -0.9 455,849 + -0.7 455,857 - +0.5 455,857 - +1.8 455,857 - -1.0 455,939 - PGA1_c04630 0.12 -0.7 455,961 + PGA1_c04630 0.14 +0.5 455,961 + PGA1_c04630 0.14 -0.7 455,961 + PGA1_c04630 0.14 +0.3 455,999 + PGA1_c04630 0.18 -2.0 456,016 - PGA1_c04630 0.19 -0.6 456,029 - PGA1_c04630 0.20 +0.3 456,060 - PGA1_c04630 0.23 +2.3 456,078 + PGA1_c04630 0.25 +0.7 456,096 - PGA1_c04630 0.26 -2.3 456,099 + PGA1_c04630 0.27 -0.2 456,107 - PGA1_c04630 0.27 -1.2 456,107 - PGA1_c04630 0.27 +1.1
Or see this region's nucleotide sequence